[←][→] ath   AT3G53890 Gene
functional annotation
Function   Ribosomal protein S21e  
GO BP
GO:0000461 [list] [network] endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (2 genes)  IBA  
GO:0000447 [list] [network] endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (4 genes)  IBA  
GO:0009658 [list] [network] chloroplast organization  (194 genes)  IGI  
GO:0006412 [list] [network] translation  (1149 genes)  IEA  
GO CC
GO:0022627 [list] [network] cytosolic small ribosomal subunit  (110 genes)  IBA IDA  
GO:0022626 [list] [network] cytosolic ribosome  (317 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (248 genes)  IBA  
KEGG ath03010 [list] [network] Ribosome (356 genes)
Protein NP_001078280.1  NP_190957.1 
BLAST NP_001078280.1  NP_190957.1 
Orthologous [Ortholog page] LOC542449 (zma)  LOC542458 (zma)  AT5G27700 (ath)  LOC4333672 (osa)  LOC25488134 (mtr)  LOC100246017 (vvi)  LOC100266516 (vvi)  LOC100499937 (gma)  LOC100817753 (gma)  LOC101244950 (sly)  LOC101245249 (sly)  LOC101254027 (sly)  LOC103837171 (bra)  LOC103841308 (bra)  LOC103854669 (bra)  LOC103863277 (bra)  LOC103874516 (bra)  LOC109940214 (zma) 
Subcellular
localization
wolf
mito 7,  nucl 1,  chlo 1,  plas 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001078280.1)
mito 7,  nucl 1,  chlo 1,  plas 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_190957.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001078280.1)
other 8  (predict for NP_190957.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
Genes directly connected with AT3G53890 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
15.1 AT3G23390 Zinc-binding ribosomal protein family protein [detail] 821920
13.8 RPS28 ribosomal protein S28 [detail] 836535
13.3 AT2G43460 Ribosomal L38e protein family [detail] 818947
12.5 RS27A ribosomal protein S27 [detail] 825283
8.5 FBR12 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [detail] 839203
Coexpressed
gene list		 [Coexpressed gene list for AT3G53890]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251921_at
251921_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251921_at
251921_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251921_at
251921_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824556      
Refseq ID (protein) NP_001078280.1 
NP_190957.1 


The preparation time of this page was 0.3 [sec].