[←][→] ath   At3g53920 Gene
functional annotation
Function   RNApolymerase sigma-subunit C    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0019685 [list] [network] photosynthesis, dark reaction  (8 genes)  NAS  
GO:0006352 [list] [network] DNA-templated transcription initiation  (26 genes)  IDA IEA TAS  
GO:0071482 [list] [network] cellular response to light stimulus  (146 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  IEA  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1660 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5004 genes)  IDA ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0003899 [list] [network] DNA-directed 5'-3' RNA polymerase activity  (12 genes)  IMP ISS  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (708 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  IEA  
KEGG
Protein NP_001326036.1  NP_190960.1 
BLAST NP_001326036.1  NP_190960.1 
Orthologous [Ortholog page] LOC4339778 (osa)  LOC7462282 (ppo)  LOC11429595 (mtr)  LOC100802522 (gma)  LOC101268893 (sly)  LOC103863276 (bra)  LOC123070406 (tae)  LOC123149263 (tae)  LOC123183344 (tae)  LOC123452471 (hvu) 
Subcellular
localization
wolf
chlo 9  (predict for NP_001326036.1)
chlo 9,  nucl 1,  pero 1  (predict for NP_190960.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001326036.1)
chlo 9  (predict for NP_190960.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00053 Ascorbate and aldarate metabolism 2
ath03018 RNA degradation 2
Genes directly connected with SIGC on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.8 EX1 UvrB/UvrC domain protein (DUF3506) [detail] 829504
6.5 AT5G42310 Pentatricopeptide repeat (PPR-like) superfamily protein [detail] 834236
6.5 AT5G03430 phosphoadenosine phosphosulfate (PAPS) reductase family protein [detail] 831843
5.5 AT1G73170 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 843649
Coexpressed
gene list		 [Coexpressed gene list for SIGC]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251929_at
251929_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251929_at
251929_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251929_at
251929_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824559      
Refseq ID (protein) NP_001326036.1 
NP_190960.1 


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