[←][→] ath   AT3G53920 Gene
functional annotation
Function   RNApolymerase sigma-subunit C  
GO BP
GO:0019685 [list] [network] photosynthesis, dark reaction  (19 genes)  NAS  
GO:0006352 [list] [network] DNA-templated transcription, initiation  (56 genes)  IDA TAS  
GO:0071482 [list] [network] cellular response to light stimulus  (131 genes)  IEP  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1988 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0003899 [list] [network] DNA-directed 5'-3' RNA polymerase activity  (59 genes)  IMP ISS  
GO:0044212 [list] [network] transcription regulatory region DNA binding  (871 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
KEGG
Protein NP_001326036.1  NP_190960.1 
BLAST NP_001326036.1  NP_190960.1 
Orthologous [Ortholog page] LOC542081 (zma)  LOC4339778 (osa)  LOC7462282 (ppo)  LOC11429595 (mtr)  LOC100252651 (vvi)  LOC100802522 (gma)  LOC101268893 (sly)  LOC103863276 (bra) 
Subcellular
localization
wolf
chlo 9  (predict for NP_001326036.1)
chlo 9,  nucl 1,  pero 1  (predict for NP_190960.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001326036.1)
chlo 9  (predict for NP_190960.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with SIGC on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.1 EX1 UvrB/UvrC domain protein (DUF3506) [detail] 829504
6.3 PMI1 plastid movement impaired1 [detail] 840860
6.2 AT5G04810 pentatricopeptide (PPR) repeat-containing protein [detail] 830360
5.2 AT1G65070 DNA mismatch repair protein MutS, type 2 [detail] 842815
4.6 AT1G73170 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 843649
Coexpressed
gene list		 [Coexpressed gene list for SIGC]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251929_at
251929_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251929_at
251929_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251929_at
251929_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824559      
Refseq ID (protein) NP_001326036.1 
NP_190960.1 


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