[←][→] ath   At3g54200 Gene
functional annotation
Function   Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0010200 [list] [network] response to chitin  (304 genes)  IEA  
GO:0002376 [list] [network] immune system process  (453 genes)  IEA  
GO:0009409 [list] [network] response to cold  (472 genes)  IEA  
GO:0006979 [list] [network] response to oxidative stress  (545 genes)  IEA  
GO:0009753 [list] [network] response to jasmonic acid  (611 genes)  IEA  
GO:0031347 [list] [network] regulation of defense response  (749 genes)  IEA  
GO:0006970 [list] [network] response to osmotic stress  (883 genes)  IEA  
GO:0042742 [list] [network] defense response to bacterium  (980 genes)  IEA  
GO:0009620 [list] [network] response to fungus  (999 genes)  IEA  
GO:0009414 [list] [network] response to water deprivation  (1006 genes)  IEA  
GO:0006629 [list] [network] lipid metabolic process  (1087 genes)  IEA  
GO:0097305 [list] [network] response to alcohol  (1209 genes)  IEA  
GO:0033993 [list] [network] response to lipid  (1939 genes)  IEA  
GO CC
GO:0009506 [list] [network] plasmodesma  (871 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG
Protein NP_190988.1 
BLAST NP_190988.1 
Orthologous [Ortholog page] LOC7472500 (ppo)  LOC7485429 (ppo)  LOC7489908 (ppo)  LOC11414727 (mtr)  LOC11442231 (mtr)  LOC18100036 (ppo)  LOC25492115 (mtr)  LOC25492116 (mtr)  LOC100306568 (gma)  LOC100777377 (gma)  LOC100793994 (gma)  LOC100800442 (gma)  LOC100800449 (gma)  LOC100802530 (gma)  LOC100804569 (gma)  LOC100806578 (gma)  LOC100807939 (gma)  LOC100808471 (gma)  LOC100811806 (gma)  LOC101268505 (sly)  LOC103829969 (bra)  LOC103841336 (bra) 
Subcellular
localization
wolf
cyto 3,  golg 2,  cyto_E.R. 2,  chlo 1,  E.R. 1,  golg_plas 1,  cyto_pero 1  (predict for NP_190988.1)
Subcellular
localization
TargetP
other 8  (predict for NP_190988.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 7
ath00062 Fatty acid elongation 4
Genes directly connected with AT3G54200 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.4 KCS1 3-ketoacyl-CoA synthase 1 [detail] 839395
6.1 MYB96 myb domain protein 96 [detail] 836367
6.1 MSS3 Calcium-binding EF-hand family protein [detail] 818931
4.6 AT5G41810 Avr9/Cf-9 rapidly elicited protein [detail] 834186
Coexpressed
gene list		 [Coexpressed gene list for AT3G54200]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251879_at
251879_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251879_at
251879_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251879_at
251879_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824587      
Refseq ID (protein) NP_190988.1 


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