[←][→] ath   At3g54500 Gene
functional annotation
Function   agglutinin-like protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0032922 [list] [network] circadian regulation of gene expression  (9 genes)  IDA  
GO:0009649 [list] [network] entrainment of circadian clock  (12 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (62 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001190089.1  NP_001319746.1  NP_001319747.1  NP_001326676.1  NP_001326677.1  NP_001326678.1  NP_191014.2  NP_974432.2 
BLAST NP_001190089.1  NP_001319746.1  NP_001319747.1  NP_001326676.1  NP_001326677.1  NP_001326678.1  NP_191014.2  NP_974432.2 
Orthologous [Ortholog page] LOC4324539 (osa)  LOC7496003 (ppo)  LOC18097188 (ppo)  LOC18097192 (ppo)  LOC18097198 (ppo)  LOC18110162 (ppo)  LOC18110165 (ppo)  LOC100781565 (gma)  LOC100793985 (gma)  LOC100800977 (gma)  LOC100812174 (gma)  LOC101268608 (sly)  LOC103829982 (bra)  LOC103863228 (bra)  LOC120579648 (mtr)  LOC123061210 (tae)  LOC123069845 (tae)  LOC123078356 (tae)  LOC123443599 (hvu) 
Subcellular
localization
wolf
nucl 5,  plas 1,  vacu 1,  chlo 1,  mito 1,  extr 1,  chlo_mito 1,  golg_plas 1,  E.R._vacu 1,  cysk_plas 1,  E.R._plas 1,  cyto_plas 1  (predict for NP_001190089.1)
nucl 9  (predict for NP_001319746.1)
nucl 9  (predict for NP_001319747.1)
nucl 10  (predict for NP_001326676.1)
nucl 10  (predict for NP_001326677.1)
nucl 10  (predict for NP_001326678.1)
nucl 10  (predict for NP_191014.2)
nucl 10  (predict for NP_974432.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001190089.1)
other 9  (predict for NP_001319746.1)
other 9  (predict for NP_001319747.1)
other 7,  chlo 3  (predict for NP_001326676.1)
other 9  (predict for NP_001326677.1)
other 9  (predict for NP_001326678.1)
other 9  (predict for NP_191014.2)
other 7,  chlo 3  (predict for NP_974432.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
Genes directly connected with AT3G54500 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
17.1 CCA1 circadian clock associated 1 [detail] 819296
14.4 AT3G12320 uncharacterized protein [detail] 820411
13.8 AT5G06980 uncharacterized protein [detail] 830589
13.3 LHY Homeodomain-like superfamily protein [detail] 839341
10.6 RVE8 Homeodomain-like superfamily protein [detail] 820117
10.3 PHT4;1 phosphate transporter 4;1 [detail] 817515
4.9 AT3G54510 Early-responsive to dehydration stress protein (ERD4) [detail] 824616
Coexpressed
gene list		 [Coexpressed gene list for AT3G54500]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251869_at
251869_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251869_at
251869_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251869_at
251869_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824615      
Refseq ID (protein) NP_001190089.1 
NP_001319746.1 
NP_001319747.1 
NP_001326676.1 
NP_001326677.1 
NP_001326678.1 
NP_191014.2 
NP_974432.2 


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