[←][→] ath   AT3G54890 Gene
functional annotation
Function   chlorophyll a-b binding protein 6  
GO BP
GO:0009645 [list] [network] response to low light intensity stimulus  (20 genes)  IEP  
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (21 genes)  IDA IMP  
GO:0009765 [list] [network] photosynthesis, light harvesting  (37 genes)  IEA  
GO:0018298 [list] [network] protein-chromophore linkage  (38 genes)  IEA  
GO:0010218 [list] [network] response to far red light  (54 genes)  IEP  
GO:0009644 [list] [network] response to high light intensity  (65 genes)  IEP  
GO:0010114 [list] [network] response to red light  (74 genes)  IEP  
GO:0009637 [list] [network] response to blue light  (98 genes)  IEP  
GO:0009409 [list] [network] response to cold  (411 genes)  IEP  
GO CC
GO:0009522 [list] [network] photosystem I  (35 genes)  IEA  
GO:0009523 [list] [network] photosystem II  (52 genes)  IEA  
GO:0010287 [list] [network] plastoglobule  (68 genes)  IDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (373 genes)  IDA IEA  
GO:0009534 [list] [network] chloroplast thylakoid  (474 genes)  IDA  
GO:0009579 [list] [network] thylakoid  (543 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IDA  
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (27 genes)  IEA ISS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
Protein NP_001078288.1  NP_191049.1  NP_850705.1  NP_850706.1 
BLAST NP_001078288.1  NP_191049.1  NP_850705.1  NP_850706.1 
Orthologous [Ortholog page] CAB6A (sly)  LOC4340892 (osa)  LOC7457873 (ppo)  LOC7458654 (ppo)  LOC25495910 (mtr)  LOC100263275 (vvi)  LOC100281791 (zma)  LOC100283212 (zma)  LOC100305992 (gma)  LOC100800350 (gma)  LOC101253380 (sly)  LOC103829997 (bra)  LOC103841392 (bra) 
Subcellular
localization
wolf
chlo 6,  extr 2,  nucl 1,  mito 1,  vacu 1  (predict for NP_001078288.1)
chlo 4,  vacu 2,  chlo_mito 2,  extr 1,  E.R. 1  (predict for NP_191049.1)
chlo 9  (predict for NP_850705.1)
chlo 10  (predict for NP_850706.1)
Subcellular
localization
TargetP
chlo 7,  scret 3  (predict for NP_001078288.1)
chlo 7,  scret 3  (predict for NP_191049.1)
chlo 7,  scret 3  (predict for NP_850705.1)
chlo 7,  scret 3  (predict for NP_850706.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 13
ath00195 Photosynthesis 4
Genes directly connected with LHCA1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
22.8 LHCB3 light-harvesting chlorophyll B-binding protein 3 [detail] 835515
22.7 LHCA3 PSI type III chlorophyll a/b-binding protein [detail] 842446
22.4 LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 [detail] 823901
18.2 LHCB6 light harvesting complex photosystem II subunit 6 [detail] 838151
16.7 CAB3 chlorophyll A/B binding protein 3 [detail] 839869
Coexpressed
gene list		 [Coexpressed gene list for LHCA1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251814_at
251814_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251814_at
251814_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251814_at
251814_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824654      
Refseq ID (protein) NP_001078288.1 
NP_191049.1 
NP_850705.1 
NP_850706.1 


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