[←][→] ath   At3g54890 Gene
functional annotation
Function   chlorophyll a-b binding protein 6      
GO BP
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (10 genes)  IDA IMP  
GO:0009645 [list] [network] response to low light intensity stimulus  (33 genes)  IEP  
GO:0009644 [list] [network] response to high light intensity  (65 genes)  IEP  
GO:0009409 [list] [network] response to cold  (472 genes)  IEP  
GO CC
GO:0010287 [list] [network] plastoglobule  (57 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (21 genes)  ISS  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
Protein NP_001078288.1  NP_191049.1  NP_850705.1  NP_850706.1 
BLAST NP_001078288.1  NP_191049.1  NP_850705.1  NP_850706.1 
Orthologous [Ortholog page] CAB6A (sly)  LOC4340892 (osa)  LOC7457873 (ppo)  LOC7458654 (ppo)  LOC25495910 (mtr)  LOC100305992 (gma)  LOC100800350 (gma)  LOC101253380 (sly)  LOC103829997 (bra)  LOC103841392 (bra)  LOC123156730 (tae)  LOC123164655 (tae)  LOC123410658 (hvu) 
Subcellular
localization
wolf
chlo 6,  extr 2,  nucl 1,  mito 1,  vacu 1  (predict for NP_001078288.1)
chlo 4,  vacu 2,  chlo_mito 2,  extr 1,  E.R. 1  (predict for NP_191049.1)
chlo 9  (predict for NP_850705.1)
chlo 10  (predict for NP_850706.1)
Subcellular
localization
TargetP
chlo 7,  scret 3  (predict for NP_001078288.1)
chlo 7,  scret 3  (predict for NP_191049.1)
chlo 7,  scret 3  (predict for NP_850705.1)
chlo 7,  scret 3  (predict for NP_850706.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 14
ath00195 Photosynthesis 6
Genes directly connected with LHCA1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
23.3 LHCA3 PSI type III chlorophyll a/b-binding protein [detail] 842446
23.2 LHCB3 light-harvesting chlorophyll B-binding protein 3 [detail] 835515
22.5 LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 [detail] 823901
20.5 LHCB5 light harvesting complex of photosystem II 5 [detail] 826626
18.2 LHCB6 light harvesting complex photosystem II subunit 6 [detail] 838151
15.0 CAB3 chlorophyll A/B binding protein 3 [detail] 839869
Coexpressed
gene list		 [Coexpressed gene list for LHCA1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251814_at
251814_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251814_at
251814_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251814_at
251814_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824654      
Refseq ID (protein) NP_001078288.1 
NP_191049.1 
NP_850705.1 
NP_850706.1 


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