[←][→] ath   At3g54990 Gene
functional annotation
Function   Integrase-type DNA-binding superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009658 [list] [network] chloroplast organization  (209 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  IEA TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IC ISM TAS  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (708 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1277 genes)  TAS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS TAS  
KEGG
Protein NP_001078290.1  NP_191059.2 
BLAST NP_001078290.1  NP_191059.2 
Orthologous [Ortholog page] LOC103841411 (bra) 
Subcellular
localization
wolf
nucl 8,  chlo 1,  extr 1,  pero 1  (predict for NP_001078290.1)
nucl 8,  cyto 1,  extr 1,  pero 1,  cyto_pero 1  (predict for NP_191059.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001078290.1)
other 8  (predict for NP_191059.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath04075 Plant hormone signal transduction 2
Genes directly connected with SMZ on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.3 DDB2 damaged DNA binding 2 [detail] 835990
5.2 RAP2.7 uncharacterized protein [detail] 817403
4.9 TOE2 target of early activation tagged (EAT) 2 [detail] 836134
4.5 AT5G21280 hydroxyproline-rich glycoprotein family protein [detail] 832258
Coexpressed
gene list		 [Coexpressed gene list for SMZ]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251811_at
251811_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251811_at
251811_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251811_at
251811_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824664      
Refseq ID (protein) NP_001078290.1 
NP_191059.2 


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