functional annotation |
Function |
dicarboxylate diiron protein, putative (Crd1) |
|
GO BP |
GO:1901401 [list] [network] regulation of tetrapyrrole metabolic process
|
(27 genes)
|
IMP
|
|
GO:0015995 [list] [network] chlorophyll biosynthetic process
|
(41 genes)
|
IEA
IMP
|
|
GO:0009658 [list] [network] chloroplast organization
|
(194 genes)
|
IMP
|
|
GO:0015979 [list] [network] photosynthesis
|
(206 genes)
|
IEA
|
|
GO:0055114 [list] [network] oxidation-reduction process
|
(1468 genes)
|
IEA
|
|
|
GO CC |
|
GO MF |
GO:0048529 [list] [network] magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity
|
(1 genes)
|
IMP
NAS
|
|
GO:0003677 [list] [network] DNA binding
|
(2280 genes)
|
TAS
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
KEGG |
ath00860 [list] [network] Porphyrin and chlorophyll metabolism (53 genes) |
|
Protein |
NP_001190112.1
NP_191253.1
|
BLAST |
NP_001190112.1
NP_191253.1
|
Orthologous |
[Ortholog page]
LOC4326901 (osa)
LOC11420139 (mtr)
LOC100241461 (vvi)
LOC100527925 (gma)
LOC100805393 (gma)
LOC101257518 (sly)
LOC103634652 (zma)
LOC103650025 (zma)
LOC103830076 (bra)
LOC103841596 (bra)
|
Subcellular localization wolf |
cyto 5,
nucl 2,
cysk 1,
nucl_plas 1
|
(predict for NP_001190112.1)
|
chlo 8,
chlo_mito 5,
mito 1
|
(predict for NP_191253.1)
|
|
Subcellular localization TargetP |
other 8
|
(predict for NP_001190112.1)
|
chlo 9
|
(predict for NP_191253.1)
|
|
Gene coexpression |
Network*for coexpressed genes |
KEGG* ID |
Title |
#genes |
Link to the KEGG* map (Multiple genes) |
ath00196 |
Photosynthesis - antenna proteins |
10 |
|
ath00860 |
Porphyrin and chlorophyll metabolism |
4 |
|
ath00195 |
Photosynthesis |
3 |
|
Genes directly connected with CRD1 on the network
coex z* |
Locus |
Function* |
Coexpression detail |
Entrez Gene ID* |
13.6 |
AT1G74470 |
Pyridine nucleotide-disulfide oxidoreductase family protein |
[detail] |
843788 |
13.2 |
LHCB5 |
light harvesting complex of photosystem II 5 |
[detail] |
826626 |
12.8 |
LHCB3 |
light-harvesting chlorophyll B-binding protein 3 |
[detail] |
835515 |
12.2 |
GUN5 |
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) |
[detail] |
831207 |
11.2 |
TROL |
thylakoid rhodanese-like protein |
[detail] |
827921 |
10.4 |
AT2G35260 |
CAAX protease self-immunity protein |
[detail] |
818093 |
8.2 |
PORB |
protochlorophyllide oxidoreductase B |
[detail] |
828853 |
8.0 |
AT4G27700 |
Rhodanese/Cell cycle control phosphatase superfamily protein |
[detail] |
828884 |
7.8 |
GUN4 |
protein GENOMES UNCOUPLED 4 |
[detail] |
825109 |
|
Coexpressed gene list |
[Coexpressed gene list for CRD1]
|
Gene expression |
All samples |
[Expression pattern for all samples]
|
AtGenExpress* (Development) |
251664_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress* (Stress) |
251664_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress* (Hormone) |
251664_at
X axis is samples (xls file), and Y axis is log-expression.
|