[][] ath   At3g56940 Gene
functional annotation
Function   dicarboxylate diiron protein, putative (Crd1) Plant GARDENPlant GARDEN JBrowse
GO BP
GO:1901401 [list] [network] regulation of tetrapyrrole metabolic process  (40 genes)  IMP  
GO:0015995 [list] [network] chlorophyll biosynthetic process  (56 genes)  IEA IMP  
GO:0009658 [list] [network] chloroplast organization  (209 genes)  IMP  
GO CC
GO:0009706 [list] [network] chloroplast inner membrane  (61 genes)  IDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0048529 [list] [network] magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity  (2 genes)  IEA IMP NAS  
GO:0046872 [list] [network] metal ion binding  (1000 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1277 genes)  TAS  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath00860 [list] [network] Porphyrin metabolism (53 genes)
Protein NP_001190112.1  NP_191253.1 
BLAST NP_001190112.1  NP_191253.1 
Orthologous [Ortholog page] LOC4326901 (osa)LOC7458885 (ppo)LOC7495664 (ppo)LOC11420139 (mtr)LOC100037649 (tae)LOC100527925 (gma)LOC100805393 (gma)LOC101257518 (sly)LOC103830076 (bra)LOC103841596 (bra)LOC123061131 (tae)LOC123078196 (tae)LOC123443540 (hvu)
Subcellular
localization
wolf
cyto 5,  nucl 2,  cysk 1,  nucl_plas 1  (predict for NP_001190112.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_191253.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001190112.1)
chlo 9  (predict for NP_191253.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 9
ath00860 Porphyrin metabolism 4
ath00195 Photosynthesis 3
Genes directly connected with CRD1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
16.6 AT1G74470 Pyridine nucleotide-disulfide oxidoreductase family protein [detail] 843788
13.8 LHCB5 light harvesting complex of photosystem II 5 [detail] 826626
13.6 LHCB3 light-harvesting chlorophyll B-binding protein 3 [detail] 835515
12.7 GUN5 magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) [detail] 831207
12.2 TROL thylakoid rhodanese-like protein [detail] 827921
11.0 AT2G35260 CAAX protease self-immunity protein [detail] 818093
9.4 PORB protochlorophyllide oxidoreductase B [detail] 828853
7.7 AT4G27700 Rhodanese/Cell cycle control phosphatase superfamily protein [detail] 828884
Coexpressed
gene list
[Coexpressed gene list for CRD1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251664_at
251664_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251664_at
251664_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
251664_at
251664_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 824861    
Refseq ID (protein) NP_001190112.1 
NP_191253.1 


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