[←][→] ath   At3g56940 Gene
functional annotation
Function   dicarboxylate diiron protein, putative (Crd1)      
GO BP
GO:1901401 [list] [network] regulation of tetrapyrrole metabolic process  (40 genes)  IMP  
GO:0015995 [list] [network] chlorophyll biosynthetic process  (56 genes)  IEA IMP  
GO:0009658 [list] [network] chloroplast organization  (209 genes)  IMP  
GO CC
GO:0009706 [list] [network] chloroplast inner membrane  (61 genes)  IDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0048529 [list] [network] magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity  (2 genes)  IEA IMP NAS  
GO:0046872 [list] [network] metal ion binding  (1000 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1277 genes)  TAS  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath00860 [list] [network] Porphyrin metabolism (53 genes)
Protein NP_001190112.1  NP_191253.1 
BLAST NP_001190112.1  NP_191253.1 
Orthologous [Ortholog page] LOC4326901 (osa)  LOC7458885 (ppo)  LOC7495664 (ppo)  LOC11420139 (mtr)  LOC100037649 (tae)  LOC100527925 (gma)  LOC100805393 (gma)  LOC101257518 (sly)  LOC103830076 (bra)  LOC103841596 (bra)  LOC123061131 (tae)  LOC123078196 (tae)  LOC123443540 (hvu) 
Subcellular
localization
wolf
cyto 5,  nucl 2,  cysk 1,  nucl_plas 1  (predict for NP_001190112.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_191253.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001190112.1)
chlo 9  (predict for NP_191253.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 9
ath00860 Porphyrin metabolism 4
ath00195 Photosynthesis 3
Genes directly connected with CRD1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
16.6 AT1G74470 Pyridine nucleotide-disulfide oxidoreductase family protein [detail] 843788
13.8 LHCB5 light harvesting complex of photosystem II 5 [detail] 826626
13.6 LHCB3 light-harvesting chlorophyll B-binding protein 3 [detail] 835515
12.7 GUN5 magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) [detail] 831207
12.2 TROL thylakoid rhodanese-like protein [detail] 827921
11.0 AT2G35260 CAAX protease self-immunity protein [detail] 818093
9.4 PORB protochlorophyllide oxidoreductase B [detail] 828853
7.7 AT4G27700 Rhodanese/Cell cycle control phosphatase superfamily protein [detail] 828884
Coexpressed
gene list		 [Coexpressed gene list for CRD1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251664_at
251664_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251664_at
251664_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251664_at
251664_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824861      
Refseq ID (protein) NP_001190112.1 
NP_191253.1 


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