[←][→] ath   At3g60600 Gene
functional annotation
Function   vesicle associated protein      
GO BP
GO:0046907 [list] [network] intracellular transport  (330 genes)  TAS  
GO CC
GO:0000326 [list] [network] protein storage vacuole  (13 genes)  IDA  
GO:0005789 [list] [network] endoplasmic reticulum membrane  (108 genes)  IDA  
GO:0005783 [list] [network] endoplasmic reticulum  (856 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA ISM  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001030903.1  NP_001030904.1  NP_567101.1 
BLAST NP_001030903.1  NP_001030904.1  NP_567101.1 
Orthologous [Ortholog page] LOC780601 (tae)  PVA12 (ath)  AT4G00170 (ath)  LOC4336509 (osa)  LOC4344689 (osa)  LOC4344695 (osa)  LOC7453954 (ppo)  LOC7453956 (ppo)  LOC7471620 (ppo)  LOC11412003 (mtr)  LOC11424030 (mtr)  LOC11426935 (mtr)  LOC18094564 (ppo)  LOC18105191 (ppo)  LOC100305725 (gma)  LOC100527687 (gma)  LOC100779655 (gma)  LOC100791280 (gma)  LOC100798247 (gma)  LOC100805159 (gma)  LOC101244532 (sly)  LOC101244994 (sly)  LOC101245885 (sly)  LOC101254623 (sly)  LOC101264447 (sly)  LOC103830133 (bra)  LOC103830268 (bra)  LOC103841907 (bra)  LOC103858157 (bra)  LOC103858877 (bra)  LOC103862872 (bra)  LOC103866194 (bra)  LOC120577098 (mtr)  LOC123046019 (tae)  LOC123053892 (tae)  LOC123147320 (tae)  LOC123147352 (tae)  LOC123161490 (tae)  LOC123165281 (tae)  LOC123169782 (tae)  LOC123189780 (tae)  LOC123407531 (hvu)  LOC123408940 (hvu)  LOC123427348 (hvu) 
Subcellular
localization
wolf
chlo 5,  nucl 3,  extr 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001030903.1)
nucl 8,  chlo 1,  extr 1,  cysk 1  (predict for NP_001030904.1)
golg 3,  plas 1,  E.R._plas 1,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_567101.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001030903.1)
other 7  (predict for NP_001030904.1)
other 7  (predict for NP_567101.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath04136 Autophagy - other 2
ath04130 SNARE interactions in vesicular transport 2
Genes directly connected with VAP27-1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.4 PP2A-4 protein phosphatase 2A-4 [detail] 825019
8.5 ATRER1C1 Rer1 family protein [detail] 816863
8.5 AT5G32440 Ubiquitin system component Cue protein [detail] 833203
8.4 AT5G14240 Thioredoxin superfamily protein [detail] 831274
8.1 AT2G29020 Rab5-interacting family protein [detail] 817451
7.3 PVA12 plant VAP homolog 12 [detail] 819122
7.0 AT5G51400 PLAC8 family protein [detail] 835214
6.6 UBC22 ubiquitin-conjugating enzyme 22 [detail] 830390
6.0 COV1 CONTINUOUS VASCULAR RING protein (DUF502) [detail] 816531
5.8 ckl3 casein kinase I-like 3 [detail] 829009
Coexpressed
gene list		 [Coexpressed gene list for VAP27-1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251338_at
251338_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251338_at
251338_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251338_at
251338_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 825231      
Refseq ID (protein) NP_001030903.1 
NP_001030904.1 
NP_567101.1 


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