[←][→] ath   AT3G60600 Gene
functional annotation
Function   vesicle associated protein  
GO BP
GO:0061817 [list] [network] endoplasmic reticulum-plasma membrane tethering  (9 genes)  IBA  
GO:0090158 [list] [network] endoplasmic reticulum membrane organization  (9 genes)  IBA  
GO:0016032 [list] [network] viral process  (63 genes)  IEA  
GO:0046907 [list] [network] intracellular transport  (626 genes)  TAS  
GO CC
GO:0032586 [list] [network] protein storage vacuole membrane  (6 genes)  IEA  
GO:0000326 [list] [network] protein storage vacuole  (12 genes)  IDA  
GO:0005789 [list] [network] endoplasmic reticulum membrane  (466 genes)  IBA IDA  
GO:0005783 [list] [network] endoplasmic reticulum  (877 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  IBA IDA ISM  
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001030903.1  NP_001030904.1  NP_567101.1 
BLAST NP_001030903.1  NP_001030904.1  NP_567101.1 
Orthologous [Ortholog page] PVA12 (ath)  AT4G00170 (ath)  LOC4336509 (osa)  LOC4344689 (osa)  LOC4344695 (osa)  LOC7453956 (ppo)  LOC7471620 (ppo)  LOC11412003 (mtr)  LOC11424030 (mtr)  LOC11426935 (mtr)  LOC100191705 (zma)  LOC100253897 (vvi)  LOC100253999 (vvi)  LOC100257387 (vvi)  LOC100280363 (zma)  LOC100286234 (zma)  LOC100305725 (gma)  LOC100779655 (gma)  LOC100791280 (gma)  LOC100798247 (gma)  LOC100805159 (gma)  LOC101244532 (sly)  LOC101245885 (sly)  LOC101254623 (sly)  LOC101264447 (sly)  LOC103830133 (bra)  LOC103830268 (bra)  LOC103841907 (bra)  LOC103858157 (bra)  LOC103858877 (bra)  LOC103862872 (bra)  LOC103866194 (bra) 
Subcellular
localization
wolf
chlo 5,  nucl 3,  extr 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001030903.1)
nucl 8,  chlo 1,  extr 1,  cysk 1  (predict for NP_001030904.1)
golg 3,  plas 1,  E.R._plas 1,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_567101.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001030903.1)
other 7  (predict for NP_001030904.1)
other 7  (predict for NP_567101.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with VAP27-1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.3 AT2G47960 trafficking protein particle complex subunit-like protein [detail] 819408
8.0 AT5G32440 Ubiquitin system component Cue protein [detail] 833203
7.8 PP2A-4 protein phosphatase 2A-4 [detail] 825019
7.5 PVA12 plant VAP homolog 12 [detail] 819122
6.4 UBC22 ubiquitin-conjugating enzyme 22 [detail] 830390
6.3 AT5G51400 PLAC8 family protein [detail] 835214
6.2 SPT1 serine palmitoyltransferase 1 [detail] 824039
5.9 AT1G06060 LisH and RanBPM domains containing protein [detail] 837115
5.1 AT1G07470 Transcription factor IIA, alpha/beta subunit [detail] 837259
4.7 AT4G05060 PapD-like superfamily protein [detail] 825848
Coexpressed
gene list		 [Coexpressed gene list for VAP27-1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251338_at
251338_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251338_at
251338_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251338_at
251338_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 825231      
Refseq ID (protein) NP_001030903.1 
NP_001030904.1 
NP_567101.1 


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