[←][→] ath   At4g00020 Gene
functional annotation
Function   BREAST CANCER 2 like 2A    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0048314 [list] [network] embryo sac morphogenesis  (3 genes)  IMP  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (40 genes)  IGI  
GO:0009553 [list] [network] embryo sac development  (163 genes)  IMP  
GO:0051321 [list] [network] meiotic cell cycle  (276 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (697 genes)  IMP  
GO:0031347 [list] [network] regulation of defense response  (749 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  IGI  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
Protein NP_001154192.1  NP_001328737.1  NP_001328738.1  NP_001328739.1  NP_191913.3 
BLAST NP_001154192.1  NP_001328737.1  NP_001328738.1  NP_001328739.1  NP_191913.3 
Orthologous [Ortholog page] BRCA2B (ath)  LOC4324417 (osa)  LOC7463421 (ppo)  LOC11435666 (mtr)  LOC25480600 (mtr)  LOC25495886 (mtr)  LOC100797849 (gma)  LOC101244820 (sly)  LOC103855405 (bra)  LOC103868332 (bra)  LOC123060247 (tae)  LOC123060317 (tae)  LOC123068755 (tae)  LOC123068835 (tae)  LOC123077330 (tae)  LOC123442849 (hvu) 
Subcellular
localization
wolf
nucl 6,  golg 1,  chlo 1,  plas 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  E.R._plas 1  (predict for NP_001154192.1)
nucl 9  (predict for NP_001328737.1)
nucl 9  (predict for NP_001328738.1)
nucl 8,  cyto 1  (predict for NP_001328739.1)
nucl 9  (predict for NP_191913.3)
Subcellular
localization
TargetP
other 6  (predict for NP_001154192.1)
other 6  (predict for NP_001328737.1)
other 6  (predict for NP_001328738.1)
other 6  (predict for NP_001328739.1)
other 6  (predict for NP_191913.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 6
ath03030 DNA replication 4
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 2
Genes directly connected with BRCA2(IV) on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.2 CTF18 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 839431
12.0 SYN3 Rad21/Rec8-like family protein [detail] 825124
11.8 ABAP1 ARMADILLO BTB protein 1 [detail] 831145
10.6 BRCA2B BRCA2-like B [detail] 831710
Coexpressed
gene list		 [Coexpressed gene list for BRCA2(IV)]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255724_at
255724_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255724_at
255724_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255724_at
255724_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828230      
Refseq ID (protein) NP_001154192.1 
NP_001328737.1 
NP_001328738.1 
NP_001328739.1 
NP_191913.3 


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