[←][→] ath   At4g02460 Gene
functional annotation
Function   DNA mismatch repair protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006298 [list] [network] mismatch repair  (12 genes)  IMP  
GO:0006310 [list] [network] DNA recombination  (100 genes)  IMP  
GO:0009555 [list] [network] pollen development  (376 genes)  IMP  
GO:0048316 [list] [network] seed development  (1294 genes)  IMP  
GO:0010154 [list] [network] fruit development  (1349 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IC ISM  
GO MF
KEGG ath03430 [list] [network] Mismatch repair (32 genes)
Protein NP_001329304.1  NP_001329305.1  NP_001329306.1  NP_567236.1 
BLAST NP_001329304.1  NP_001329305.1  NP_001329306.1  NP_567236.1 
Orthologous [Ortholog page] LOC4329835 (osa)  LOC7457943 (ppo)  LOC11414900 (mtr)  LOC100793891 (gma)  LOC100802535 (gma)  LOC101258001 (sly)  LOC103868208 (bra)  LOC123127556 (tae)  LOC123137302 (tae)  LOC123144674 (tae)  LOC123401073 (hvu) 
Subcellular
localization
wolf
nucl 6,  chlo 2,  cyto 1,  mito 1,  cysk 1  (predict for NP_001329304.1)
nucl 5,  chlo 2,  cyto 1,  chlo_mito 1  (predict for NP_001329305.1)
chlo 4,  nucl 4,  cysk 1  (predict for NP_001329306.1)
nucl 4,  chlo 4,  cysk 1  (predict for NP_567236.1)
Subcellular
localization
TargetP
other 4  (predict for NP_001329304.1)
other 4  (predict for NP_001329305.1)
chlo 6,  other 3  (predict for NP_001329306.1)
chlo 6,  other 3  (predict for NP_567236.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03410 Base excision repair 3
ath03020 RNA polymerase 2
ath03030 DNA replication 2
ath03420 Nucleotide excision repair 2
Genes directly connected with PMS1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.3 RAD50 DNA repair-recombination protein (RAD50) [detail] 817756
8.1 MSH1 MUTL protein homolog 1 [detail] 822021
7.4 AT5G63960 DNA polymerase delta subunit 1 [detail] 836517
7.1 AT5G18770 F-box/FBD-like domains containing protein [detail] 831995
6.1 AT3G20010 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [detail] 821539
6.0 AT4G22280 F-box/RNI-like superfamily protein [detail] 828323
5.3 AT4G15730 CW-type Zinc Finger [detail] 827251
5.0 Pol{lambda} DNA polymerase lambda (POLL) [detail] 837592
Coexpressed
gene list		 [Coexpressed gene list for PMS1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255481_at
255481_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255481_at
255481_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255481_at
255481_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827997      
Refseq ID (protein) NP_001329304.1 
NP_001329305.1 
NP_001329306.1 
NP_567236.1 


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