[←][→] ath   AT4G02460 Gene
functional annotation
Function   DNA mismatch repair protein  
GO BP
GO:0006298 [list] [network] mismatch repair  (14 genes)  IBA IMP  
GO:0006310 [list] [network] DNA recombination  (143 genes)  IMP  
GO:0009555 [list] [network] pollen development  (337 genes)  IMP  
GO:0048316 [list] [network] seed development  (717 genes)  IMP  
GO:0010154 [list] [network] fruit development  (753 genes)  IMP  
GO CC
GO:0032389 [list] [network] MutLalpha complex  (2 genes)  IBA  
GO:0032300 [list] [network] mismatch repair complex  (8 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IC ISM  
GO MF
GO:0030983 [list] [network] mismatched DNA binding  (9 genes)  IEA  
GO:0016887 [list] [network] ATPase activity  (507 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
KEGG ath03430 [list] [network] Mismatch repair (39 genes)
Protein NP_001329304.1  NP_001329305.1  NP_001329306.1  NP_567236.1 
BLAST NP_001329304.1  NP_001329305.1  NP_001329306.1  NP_567236.1 
Orthologous [Ortholog page] LOC4329835 (osa)  LOC7457943 (ppo)  LOC11414900 (mtr)  LOC100255596 (vvi)  LOC100793891 (gma)  LOC100802535 (gma)  LOC101258001 (sly)  LOC103653697 (zma)  LOC103868208 (bra) 
Subcellular
localization
wolf
nucl 6,  chlo 2,  cyto 1,  mito 1,  cysk 1  (predict for NP_001329304.1)
nucl 5,  chlo 2,  cyto 1,  chlo_mito 1  (predict for NP_001329305.1)
chlo 4,  nucl 4,  cysk 1  (predict for NP_001329306.1)
nucl 4,  chlo 4,  cysk 1  (predict for NP_567236.1)
Subcellular
localization
TargetP
other 4  (predict for NP_001329304.1)
other 4  (predict for NP_001329305.1)
chlo 6,  other 3  (predict for NP_001329306.1)
chlo 6,  other 3  (predict for NP_567236.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
ath03430 Mismatch repair 2
ath03450 Non-homologous end-joining 2
Genes directly connected with PMS1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.8 RAD50 DNA repair-recombination protein (RAD50) [detail] 817756
6.1 MSH1 MUTL protein homolog 1 [detail] 822021
5.9 NOV Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [detail] 827009
5.8 AT5G18770 F-box/FBD-like domains containing protein [detail] 831995
4.7 AT4G22280 F-box/RNI-like superfamily protein [detail] 828323
4.3 ARP9 actin-related protein 9 [detail] 834370
Coexpressed
gene list		 [Coexpressed gene list for PMS1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255481_at
255481_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255481_at
255481_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255481_at
255481_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827997      
Refseq ID (protein) NP_001329304.1 
NP_001329305.1 
NP_001329306.1 
NP_567236.1 


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