| functional annotation |
| Function |
photosynthetic electron transfer C |
|
| GO BP |
|
GO:0010196 [list] [network] nonphotochemical quenching
|
(11 genes)
|
IMP
|
 |
|
GO:0009767 [list] [network] photosynthetic electron transport chain
|
(35 genes)
|
TAS
|
|
|
GO:0080167 [list] [network] response to karrikin
|
(128 genes)
|
IEP
|
|
|
GO:0042742 [list] [network] defense response to bacterium
|
(399 genes)
|
IEP
|
|
|
| GO CC |
|
| GO MF |
|
GO:0009496 [list] [network] plastoquinol--plastocyanin reductase activity
|
(1 genes)
|
IEA
|
|
|
GO:0045158 [list] [network] electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
|
(1 genes)
|
IEA
|
|
|
GO:0046028 [list] [network] electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity
|
(2 genes)
|
TAS
|
|
|
GO:0008121 [list] [network] ubiquinol-cytochrome-c reductase activity
|
(8 genes)
|
IBA
|
|
|
GO:0051537 [list] [network] 2 iron, 2 sulfur cluster binding
|
(57 genes)
|
IEA
|
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
| KEGG |
ath00195 [list] [network] Photosynthesis (76 genes) |
 |
| Protein |
NP_192237.1
NP_849295.1
|
| BLAST |
NP_192237.1
NP_849295.1
|
| Orthologous |
[Ortholog page]
LOC4343570 (osa)
LOC7498162 (ppo)
LOC11427739 (mtr)
PETC (gma)
LOC100245219 (vvi)
LOC100256300 (vvi)
LOC100258879 (vvi)
LOC100273026 (zma)
LOC100273354 (zma)
LOC100799420 (gma)
LOC101243864 (sly)
LOC103846718 (bra)
LOC103858708 (bra)
|
Subcellular
localization
wolf |
|
chlo 9
|
(predict for NP_192237.1)
|
|
chlo 6,
cyto 2,
mito 1,
cyto_plas 1
|
(predict for NP_849295.1)
|
|
Subcellular
localization
TargetP |
|
chlo 6
|
(predict for NP_192237.1)
|
|
chlo 4
|
(predict for NP_849295.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath00195 |
Photosynthesis |
8 |
 |
| ath00710 |
Carbon fixation in photosynthetic organisms |
7 |
 |
| ath01200 |
Carbon metabolism |
7 |
 |
| ath00630 |
Glyoxylate and dicarboxylate metabolism |
2 |
 |
| ath00030 |
Pentose phosphate pathway |
2 |
 |
Genes directly connected with PETC on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 14.6 |
DRT112 |
Cupredoxin superfamily protein |
[detail] |
838622 |
| 12.9 |
ATPC1 |
ATPase, F1 complex, gamma subunit protein |
[detail] |
825797 |
| 12.7 |
FNR1 |
ferredoxin-NADP[+]-oxidoreductase 1 |
[detail] |
836751 |
| 12.0 |
PSI-P |
photosystem I P subunit |
[detail] |
819295 |
| 12.0 |
RCA |
rubisco activase |
[detail] |
818558 |
| 11.5 |
AT2G26500 |
cytochrome b6f complex subunit (petM) |
[detail] |
817191 |
| 11.3 |
GAPA |
glyceraldehyde 3-phosphate dehydrogenase A subunit |
[detail] |
822277 |
| 10.7 |
RBCS1A |
ribulose bisphosphate carboxylase small chain 1A |
[detail] |
843029 |
| 10.0 |
PDE334 |
ATPase, F0 complex, subunit B/B', bacterial/chloroplast |
[detail] |
829359 |
| 9.4 |
RPE |
D-ribulose-5-phosphate-3-epimerase |
[detail] |
836262 |
| 8.6 |
AT3G47070 |
thylakoid soluble phosphoprotein |
[detail] |
823860 |
| 7.7 |
AT1G71500 |
Rieske (2Fe-2S) domain-containing protein |
[detail] |
843491 |
| 6.3 |
THI1 |
thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) |
[detail] |
835567 |
|
Coexpressed
gene list |
[Coexpressed gene list for PETC]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
255435_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
255435_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
255435_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT4G03280 Gene
