ATTED-II : GeneID search result

[←][→] ath AT4G03510 Gene

functional annotation

Function

RING membrane-anchor 1

GO BP

GO:0071712 [list] [network] ER-associated misfolded protein catabolic process	(13 genes)	IBA
GO:0032527 [list] [network] protein exit from endoplasmic reticulum	(18 genes)	IMP
GO:0032940 [list] [network] secretion by cell	(68 genes)	IGI
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(436 genes)	IBA IDA
GO:0016567 [list] [network] protein ubiquitination	(624 genes)	IEA

GO CC

GO:0005789 [list] [network] endoplasmic reticulum membrane	(466 genes)	IEA
GO:0005783 [list] [network] endoplasmic reticulum	(877 genes)	IDA
GO:0016021 [list] [network] integral component of membrane	(4803 genes)	IEA
GO:0016020 [list] [network] membrane	(7839 genes)	IDA
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM

GO MF

GO:0044390 [list] [network] ubiquitin-like protein conjugating enzyme binding	(52 genes)	IBA
GO:0061630 [list] [network] ubiquitin protein ligase activity	(204 genes)	IBA
GO:0004842 [list] [network] ubiquitin-protein transferase activity	(434 genes)	IDA
GO:0046872 [list] [network] metal ion binding	(3180 genes)	IEA

KEGG

ath04141 [list] [network] Protein processing in endoplasmic reticulum (211 genes)

Protein

NP_001319862.1 NP_001329467.1 NP_192260.1 NP_974506.1

BLAST

NP_001319862.1 NP_001329467.1 NP_192260.1 NP_974506.1

Orthologous

[Ortholog page] RMA3 (ath) RMA2 (ath) LOC4330106 (osa) LOC4336483 (osa) LOC7460826 (ppo) LOC7477410 (ppo) LOC25485936 (mtr) LOC25487645 (mtr) LOC25487651 (mtr) LOC25493170 (mtr) LOC25493171 (mtr) LOC25502627 (mtr) LOC100192071 (zma) LOC100255559 (vvi) LOC100257429 (vvi) LOC100265502 (vvi) LOC100286356 (zma) LOC100779793 (gma) LOC100780643 (gma) LOC100782827 (gma) LOC100785491 (gma) LOC100786373 (gma) LOC100807061 (gma) LOC100807729 (gma) LOC100816864 (gma) LOC100817526 (gma) LOC101243642 (sly) LOC101247183 (sly) LOC101248949 (sly) LOC101253976 (sly) LOC101254012 (sly) LOC101262152 (sly) MKB1 (sly) LOC101264841 (sly) LOC103627470 (zma) LOC103834771 (bra) LOC103846598 (bra) LOC103861695 (bra) LOC103861821 (bra) LOC103867189 (bra) LOC103867947 (bra)

Subcellular
localization
wolf

nucl 6, golg 1, chlo 1, cyto 1, vacu 1, golg_plas 1	(predict for NP_001319862.1)
nucl 6, golg 1, chlo 1, cyto 1, vacu 1, golg_plas 1	(predict for NP_001329467.1)
nucl 6, golg 1, chlo 1, cyto 1, vacu 1, golg_plas 1	(predict for NP_192260.1)
nucl 6, golg 1, chlo 1, cyto 1, vacu 1, golg_plas 1	(predict for NP_974506.1)

Subcellular
localization
TargetP

other 6	(predict for NP_001319862.1)
other 6	(predict for NP_001329467.1)
other 6	(predict for NP_192260.1)
other 6	(predict for NP_974506.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with RMA1 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.1	AT3G15450	aluminum induced protein with YGL and LRDR motifs	[detail]	820784
7.9	J11	Chaperone DnaJ-domain superfamily protein	[detail]	829760
7.7	J8	Chaperone DnaJ-domain superfamily protein	[detail]	844432
7.6	AT2G24240	BTB/POZ domain with WD40/YVTN repeat-like protein	[detail]	816958
6.4	AT1G24440	RING/U-box superfamily protein	[detail]	839060
5.6	AT5G50450	HCP-like superfamily protein with MYND-type zinc finger	[detail]	835113
4.9	AT3G60200	hypothetical protein	[detail]	825190
4.5	AT3G20340	protein expression protein	[detail]	821578

Coexpressed
gene list

[Coexpressed gene list for RMA1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

255381_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

255381_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

255381_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	825654
Refseq ID (protein)	NP_001319862.1
	NP_001329467.1
	NP_192260.1
	NP_974506.1

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