[][] ath   AT4G04620 Gene
functional annotation
Function   Ubiquitin-like superfamily protein
GO BP
GO:0006995 [list] [network] cellular response to nitrogen starvation  (33 genes)  IBA  
GO:0006914 [list] [network] autophagy  (55 genes)  IEA  
GO:0015031 [list] [network] protein transport  (724 genes)  IEA  
GO CC
GO:0000421 [list] [network] autophagosome membrane  (13 genes)  IEA  
GO:0005874 [list] [network] microtubule  (186 genes)  IEA  
GO:0031410 [list] [network] cytoplasmic vesicle  (748 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04136 [list] [network] Autophagy - other (40 genes)
Protein NP_001329707.1  NP_192371.1  NP_849298.1 
BLAST NP_001329707.1  NP_192371.1  NP_849298.1 
Orthologous [Ortholog page] ATG8E (ath)ATG8F (ath)APG8A (ath)ATG8C (ath)LOC4337052 (osa)LOC4343365 (osa)LOC4344857 (osa)LOC7461702 (ppo)LOC7463622 (ppo)LOC7468504 (ppo)LOC7479209 (ppo)LOC7489899 (ppo)LOC11410993 (mtr)LOC25486170 (mtr)LOC25492141 (mtr)LOC100240694 (zma)LOC100240695 (zma)LOC100240696 (zma)LOC100240697 (zma)LOC100240698 (zma)LOC100246909 (vvi)LOC100247055 (vvi)LOC100258507 (vvi)LOC100260865 (vvi)LOC100264435 (vvi)ATG8d (gma)LOC100305892 (gma)LOC100499835 (gma)LOC100500023 (gma)LOC100500165 (gma)ATG8C (gma)ATG8a (sly)LOC100736469 (sly)LOC100784677 (gma)LOC100818315 (gma)LOC100818620 (gma)LOC101246095 (sly)LOC101251945 (sly)LOC101253062 (sly)LOC103839823 (bra)LOC103847692 (bra)LOC103858161 (bra)LOC103859686 (bra)LOC103860339 (bra)LOC103861273 (bra)
Subcellular
localization
wolf
cyto 4,  nucl 3,  cysk_nucl 2,  cyto_plas 2  (predict for NP_001329707.1)
cyto 4,  nucl 3,  cysk_nucl 2,  cyto_plas 2  (predict for NP_192371.1)
cyto 4,  nucl 3,  cysk_nucl 2,  cyto_plas 2  (predict for NP_849298.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001329707.1)
other 7  (predict for NP_192371.1)
other 7  (predict for NP_849298.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 6
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with ATG8B on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
6.0 APG8A Ubiquitin-like superfamily protein [detail] 828287
6.0 UBC11 ubiquitin-conjugating enzyme 11 [detail] 820016
5.2 ATG8G Ubiquitin-like superfamily protein [detail] 825235
5.0 AT3G05937 hypothetical protein [detail] 2745871
5.0 AGL18 AGAMOUS-like 18 [detail] 824906
4.2 AT1G17780 transmembrane protein [detail] 838356
3.6 ARI15 RING/U-box superfamily protein [detail] 836496
Coexpressed
gene list
[Coexpressed gene list for ATG8B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255283_at
255283_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255283_at
255283_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
255283_at
255283_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 825794    
Refseq ID (protein) NP_001329707.1 
NP_192371.1 
NP_849298.1 


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