[←][→] ath   AT4G04890 Gene
functional annotation
Function   protodermal factor 2  
GO BP
GO:0048497 [list] [network] maintenance of floral organ identity  (7 genes)  IGI  
GO:0009913 [list] [network] epidermal cell differentiation  (14 genes)  IMP  
GO:0048825 [list] [network] cotyledon development  (54 genes)  IGI  
GO:0009845 [list] [network] seed germination  (93 genes)  IMP  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0008289 [list] [network] lipid binding  (278 genes)  IEA  
GO:0043565 [list] [network] sequence-specific DNA binding  (796 genes)  IEA  
GO:0044212 [list] [network] transcription regulatory region DNA binding  (871 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  ISS  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IDA IPI  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001329475.1  NP_567274.1 
BLAST NP_001329475.1  NP_567274.1 
Orthologous [Ortholog page] LOC542010 (zma)  ATML1 (ath)  HDG2 (ath)  LOC4337074 (osa)  LOC4344614 (osa)  LOC4344832 (osa)  LOC7458546 (ppo)  LOC7485428 (ppo)  LOC7489907 (ppo)  LOC11417538 (mtr)  LOC11441377 (mtr)  LOC100261842 (vvi)  LOC100264009 (vvi)  LOC100279257 (zma)  LOC100383453 (zma)  LOC100782240 (gma)  LOC100782260 (gma)  LOC100790101 (gma)  LOC100797992 (gma)  LOC100809556 (gma)  LOC100815499 (gma)  LOC101256132 (sly)  LOC101259395 (sly)  LOC101265620 (sly)  LOC103641332 (zma)  LOC103834218 (bra)  LOC103839805 (bra)  LOC103843620 (bra)  LOC103844157 (bra)  LOC103858676 (bra)  LOC103859403 (bra)  LOC103861249 (bra) 
Subcellular
localization
wolf
nucl 9,  chlo 1,  vacu 1  (predict for NP_001329475.1)
nucl 9,  chlo 1,  vacu 1  (predict for NP_567274.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001329475.1)
other 8  (predict for NP_567274.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00071 Fatty acid degradation 2
ath04626 Plant-pathogen interaction 2
Genes directly connected with PDF2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
15.7 ATML1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [detail] 828263
9.3 ABCG32 pleiotropic drug resistance 4 [detail] 817232
8.9 KCS10 3-ketoacyl-CoA synthase 10 [detail] 817165
7.3 CR4 crinkly4 [detail] 825111
6.3 HDG2 homeodomain GLABROUS 2 [detail] 839256
6.2 ICR1 interactor of constitutive active rops 1 [detail] 838284
5.9 LACS1 AMP-dependent synthetase and ligase family protein [detail] 819337
5.7 EXPA5 expansin A5 [detail] 822543
5.4 ANL2 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [detail] 828022
5.3 AT1G11303 G-type lectin S-receptor-like Serine/Threonine-kinase [detail] 28717232
5.2 AT4G13840 HXXXD-type acyl-transferase family protein [detail] 827018
4.7 HDG1 homeodomain GLABROUS 1 [detail] 825287
4.1 CYP71B5 cytochrome p450 71b5 [detail] 824495
Coexpressed
gene list		 [Coexpressed gene list for PDF2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255277_at
255277_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255277_at
255277_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255277_at
255277_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 825828      
Refseq ID (protein) NP_001329475.1 
NP_567274.1 


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