[←][→] ath   AT4G04940 Gene
functional annotation
Function   transducin family protein / WD-40 repeat family protein  
GO BP
GO:0006364 [list] [network] rRNA processing  (276 genes)  IBA  
GO CC
GO:0034388 [list] [network] Pwp2p-containing subcomplex of 90S preribosome  (5 genes)  IBA  
GO:0032040 [list] [network] small-subunit processome  (41 genes)  IBA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (130 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
Protein NP_001329322.1  NP_567275.1 
BLAST NP_001329322.1  NP_567275.1 
Orthologous [Ortholog page] LOC7487225 (ppo)  LOC9270402 (osa)  LOC25497027 (mtr)  LOC100266615 (vvi)  LOC100280230 (zma)  LOC100795420 (gma)  LOC100798946 (gma)  LOC101254131 (sly)  LOC103858678 (bra) 
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001329322.1)
chlo 9,  nucl 1  (predict for NP_567275.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001329322.1)
other 6  (predict for NP_567275.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
Genes directly connected with AT4G04940 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
15.3 AT2G18900 Transducin/WD40 repeat-like superfamily protein [detail] 816406
14.9 AT3G06530 ARM repeat superfamily protein [detail] 819831
14.7 AT5G11240 transducin family protein / WD-40 repeat family protein [detail] 830994
13.5 PWP2 periodic tryptophan protein 2 [detail] 838115
13.4 RBL Noc2p family [detail] 824716
13.0 PPR596 PENTATRICOPEPTIDE REPEAT 596 [detail] 844367
12.4 WDR55 transducin family protein / WD-40 repeat family protein [detail] 817987
12.3 AT1G30240 proline-, glutamic acid/leucine-rich protein [detail] 839904
12.2 AT1G30960 GTP-binding family protein [detail] 839983
12.0 AT3G10530 Transducin/WD40 repeat-like superfamily protein [detail] 820218
11.6 AT1G18850 hypothetical protein [detail] 838466
11.5 AT5G22100 RNA cyclase family protein [detail] 832271
11.3 AT5G09840 Putative endonuclease or glycosyl hydrolase [detail] 830844
10.8 AT5G06550 transferring glycosyl group transferase [detail] 830543
10.7 AR192 Co-chaperone GrpE family protein [detail] 828785
10.3 AT3G19440 Pseudouridine synthase family protein [detail] 821478
9.4 AT3G13150 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 820503
8.8 AT3G15460 Ribosomal RNA processing Brix domain protein [detail] 820785
7.9 RECA2 recA DNA recombination family protein [detail] 816468
Coexpressed
gene list		 [Coexpressed gene list for AT4G04940]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255278_at
255278_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255278_at
255278_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255278_at
255278_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 825833      
Refseq ID (protein) NP_001329322.1 
NP_567275.1 


The preparation time of this page was 0.2 [sec].