[←][→] ath   At4g04940 Gene
functional annotation
Function   transducin family protein / WD-40 repeat family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006364 [list] [network] rRNA processing  (169 genes)  IEA  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (96 genes)
Protein NP_001329322.1  NP_567275.1 
BLAST NP_001329322.1  NP_567275.1 
Orthologous [Ortholog page] LOC7487225 (ppo)  LOC9270402 (osa)  LOC25497027 (mtr)  LOC100795420 (gma)  LOC100798946 (gma)  LOC101254131 (sly)  LOC103858678 (bra)  LOC123149536 (tae)  LOC123160596 (tae)  LOC123164973 (tae)  LOC123409890 (hvu) 
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001329322.1)
chlo 9,  nucl 1  (predict for NP_567275.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001329322.1)
other 6  (predict for NP_567275.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03020 RNA polymerase 2
Genes directly connected with AT4G04940 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
16.5 AT2G18900 Transducin/WD40 repeat-like superfamily protein [detail] 816406
16.1 AT5G11240 transducin family protein / WD-40 repeat family protein [detail] 830994
14.8 AT3G06530 ARM repeat superfamily protein [detail] 819831
13.6 RBL Noc2p family [detail] 824716
13.6 AT3G57940 GNAT acetyltransferase (DUF699) [detail] 824963
13.4 PWP2 periodic tryptophan protein 2 [detail] 838115
12.8 AT1G30240 proline-, glutamic acid/leucine-rich protein [detail] 839904
12.5 PPR596 PENTATRICOPEPTIDE REPEAT 596 [detail] 844367
12.0 AT1G18850 uncharacterized protein [detail] 838466
11.1 AT3G19440 Pseudouridine synthase family protein [detail] 821478
10.9 AT5G06550 transferring glycosyl group transferase [detail] 830543
9.6 AT3G13150 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 820503
9.4 AT2G44510 CDK inhibitor P21 binding protein [detail] 819058
9.0 AT3G15460 Ribosomal RNA processing Brix domain protein [detail] 820785
7.9 RECA2 recA DNA recombination family protein [detail] 816468
Coexpressed
gene list		 [Coexpressed gene list for AT4G04940]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255278_at
255278_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255278_at
255278_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255278_at
255278_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 825833      
Refseq ID (protein) NP_001329322.1 
NP_567275.1 


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