[←][→] ath   At4g08310 Gene
functional annotation
Function   DNA ligase    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0040029 [list] [network] epigenetic regulation of gene expression  (146 genes)  IEA  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (697 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG
Protein NP_192571.1 
BLAST NP_192571.1 
Orthologous [Ortholog page] AT1G44780 (ath)  LOC4350684 (osa)  LOC7463163 (ppo)  LOC7469147 (ppo)  LOC11411392 (mtr)  LOC100784437 (gma)  LOC100784738 (gma)  LOC101246887 (sly)  LOC103847732 (bra)  LOC123086103 (tae)  LOC123092057 (tae)  LOC123097405 (tae)  LOC123448434 (hvu) 
Subcellular
localization
wolf
nucl 10  (predict for NP_192571.1)
Subcellular
localization
TargetP
other 9  (predict for NP_192571.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
Genes directly connected with AT4G08310 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
11.6 AT3G48710 DEK domain-containing chromatin associated protein [detail] 824032
10.7 PRP40A pre-mRNA-processing protein 40A [detail] 841057
10.5 AT5G55660 DEK domain-containing chromatin associated protein [detail] 835660
10.3 LINC3 little nuclei3 [detail] 843210
9.7 ELF8 binding protein [detail] 815177
9.4 AT2G40650 PRP38 family protein [detail] 818660
9.2 AT1G80810 Tudor/PWWP/MBT superfamily protein [detail] 844420
9.1 AT5G38840 SMAD/FHA domain-containing protein [detail] 833875
8.3 AT5G08420 RNA-binding KH domain-containing protein [detail] 830741
8.1 MBD10 methyl-CPG-binding domain 10 [detail] 838103
7.7 AT1G44780 translation initiation factor [detail] 841042
7.3 RDM4 RNA-directed DNA methylation 4 [detail] 817578
6.8 GTE6 general transcription factor group E6 [detail] 824393
6.2 RING1A RING 1A [detail] 834451
5.9 AT2G38370 weak chloroplast movement under blue light protein (DUF827) [detail] 818418
5.5 AT4G10890 DDE family endonuclease [detail] 826688
5.0 AT3G19515 apoptosis inhibitor [detail] 821486
Coexpressed
gene list		 [Coexpressed gene list for AT4G08310]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255128_at
255128_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255128_at
255128_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255128_at
255128_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 826385      
Refseq ID (protein) NP_192571.1 


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