[←][→] ath   At4g10340 Gene
functional annotation
Function   light harvesting complex of photosystem II 5    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0010196 [list] [network] nonphotochemical quenching  (16 genes)  IMP  
GO:0010207 [list] [network] photosystem II assembly  (27 genes)  IMP  
GO:0015979 [list] [network] photosynthesis  (167 genes)  IMP  
GO CC
GO:0009783 [list] [network] photosystem II antenna complex  (2 genes)  IMP  
GO:0009517 [list] [network] PSII associated light-harvesting complex II  (7 genes)  IDA  
GO:0009533 [list] [network] chloroplast stromal thylakoid  (8 genes)  IDA  
GO:0010287 [list] [network] plastoglobule  (57 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA  
GO:0042651 [list] [network] thylakoid membrane  (350 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (21 genes)  ISS  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
Protein NP_192772.1 
BLAST NP_192772.1 
Orthologous [Ortholog page] LOC4350176 (osa)  LOC18108360 (ppo)  LOC25496571 (mtr)  LOC100789786 (gma)  LOC100806585 (gma)  LOC100817348 (gma)  LOC100820327 (gma)  CAB9 (sly)  LOC103838910 (bra)  LOC103858561 (bra)  LOC112325791 (ppo)  LOC123086754 (tae)  LOC123091226 (tae)  LOC123096214 (tae)  LOC123447837 (hvu) 
Subcellular
localization
wolf
chlo 8,  cyto 1,  vacu 1,  pero 1,  cyto_pero 1  (predict for NP_192772.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_192772.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 11
ath00196 Photosynthesis - antenna proteins 7
ath00860 Porphyrin metabolism 2
Genes directly connected with LHCB5 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
22.8 LHCA3 PSI type III chlorophyll a/b-binding protein [detail] 842446
22.0 LHCB3 light-harvesting chlorophyll B-binding protein 3 [detail] 835515
20.5 LHCA1 chlorophyll a-b binding protein 6 [detail] 824654
20.3 PSBP-1 photosystem II subunit P-1 [detail] 837178
19.0 PSAK photosystem I subunit K [detail] 839918
18.9 PSBW photosystem II reaction center W [detail] 817606
13.8 CRD1 dicarboxylate diiron protein, putative (Crd1) [detail] 824861
11.0 AT1G74470 Pyridine nucleotide-disulfide oxidoreductase family protein [detail] 843788
Coexpressed
gene list		 [Coexpressed gene list for LHCB5]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254970_at
254970_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254970_at
254970_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254970_at
254970_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 826626      
Refseq ID (protein) NP_192772.1 


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