[][] ath   AT4G13710 Gene
functional annotation
Function   Pectin lyase-like superfamily protein
GO BP
GO:0045490 [list] [network] pectin catabolic process  (96 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3363 genes)  ISM  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (24 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (412 genes)  ISS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (96 genes)
Protein NP_001190720.1  NP_567409.1 
BLAST NP_001190720.1  NP_567409.1 
Orthologous [Ortholog page] 9612 (sly)AT3G07010 (ath)AT3G24230 (ath)AT3G24670 (ath)AT3G27400 (ath)AT4G13210 (ath)AT4G24780 (ath)AT5G48900 (ath)AT5G63180 (ath)AT1G67750 (ath)LOC4335013 (osa)LOC7453817 (ppo)LOC7458080 (ppo)LOC7460526 (ppo)LOC7467675 (ppo)LOC7469382 (ppo)LOC7481246 (ppo)LOC7488611 (ppo)LOC7494805 (ppo)LOC11408829 (mtr)LOC11409358 (mtr)LOC11411484 (mtr)LOC11413286 (mtr)LOC11426383 (mtr)LOC25483116 (mtr)LOC25489517 (mtr)LOC100101868 (gma)PL1 (vvi)PEL (vvi)LOC100242302 (vvi)LOC100243265 (vvi)LOC100251082 (vvi)LOC100273705 (zma)LOC100281162 (zma)LOC100781845 (gma)LOC100782388 (gma)LOC100790659 (gma)LOC100794814 (gma)LOC100803068 (gma)LOC100809277 (gma)LOC100810380 (gma)LOC100816256 (gma)LOC101244298 (sly)LOC101252082 (sly)PL (sly)LOC101254639 (sly)LOC101263458 (sly)LOC103828610 (bra)LOC103828688 (bra)LOC103831011 (bra)LOC103831201 (bra)LOC103833411 (bra)LOC103834896 (bra)LOC103836561 (bra)LOC103836991 (bra)LOC103837270 (bra)LOC103837461 (bra)LOC103852424 (bra)LOC103854567 (bra)LOC103861505 (bra)LOC103862557 (bra)LOC103863605 (bra)LOC103863641 (bra)LOC103870710 (bra)LOC103873738 (bra)LOC103875221 (bra)
Subcellular
localization
wolf
vacu 4,  chlo 2,  golg 1,  nucl 1,  extr 1,  E.R. 1,  golg_plas 1  (predict for NP_001190720.1)
vacu 4,  chlo 3,  golg 1,  chlo_mito 1  (predict for NP_567409.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001190720.1)
scret 9  (predict for NP_567409.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 3
Genes directly connected with AT4G13710 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
7.6 EXPA15 expansin A15 [detail] 814838
7.6 GH9C2 glycosyl hydrolase 9C2 [detail] 842747
6.8 AT4G24780 Pectin lyase-like superfamily protein [detail] 828580
4.6 MAN7 Glycosyl hydrolase superfamily protein [detail] 836778
Coexpressed
gene list
[Coexpressed gene list for AT4G13710]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254689_at
254689_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254689_at
254689_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
254689_at
254689_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 827005    
Refseq ID (protein) NP_001190720.1 
NP_567409.1 


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