ATTED-II : GeneID search result

[←][→] ath At4g13710 Gene

functional annotation

Function

Pectin lyase-like superfamily protein

GO BP

GO:0045490 [list] [network] pectin catabolic process	(78 genes)	IEA
GO:0006633 [list] [network] fatty acid biosynthetic process	(120 genes)	IEA
GO:0051301 [list] [network] cell division	(442 genes)	IEA
GO:0010015 [list] [network] root morphogenesis	(669 genes)	IEA
GO:0010035 [list] [network] response to inorganic substance	(2100 genes)	IEA

GO CC

GO:0005576 [list] [network] extracellular region

(3154 genes)

ISM

GO MF

GO:0030570 [list] [network] pectate lyase activity	(25 genes)	IEA
GO:0016829 [list] [network] lyase activity	(284 genes)	ISS

KEGG

ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)

Protein

NP_001190720.1 NP_567409.1

BLAST

NP_001190720.1 NP_567409.1

Orthologous

[Ortholog page] 9612 (sly) AT3G07010 (ath) AT3G24230 (ath) AT3G24670 (ath) AT3G27400 (ath) AT3G53190 (ath) PMR6 (ath) AT4G13210 (ath) AT4G24780 (ath) AT5G04310 (ath) AT5G48900 (ath) AT5G63180 (ath) AT1G04680 (ath) AT1G67750 (ath) LOC4335013 (osa) LOC4348800 (osa) LOC7453817 (ppo) LOC7458080 (ppo) LOC7460526 (ppo) LOC7467675 (ppo) LOC7468445 (ppo) LOC7469382 (ppo) LOC7477066 (ppo) LOC7479851 (ppo) LOC7481246 (ppo) LOC7488611 (ppo) LOC7494805 (ppo) LOC11408829 (mtr) LOC11409358 (mtr) LOC11411484 (mtr) LOC11426383 (mtr) LOC18100132 (ppo) LOC25483116 (mtr) LOC25483947 (mtr) LOC25485548 (mtr) LOC25489517 (mtr) LOC25499338 (mtr) LOC100101868 (gma) LOC100775595 (gma) LOC100779940 (gma) LOC100781845 (gma) LOC100782388 (gma) LOC100787082 (gma) LOC100789303 (gma) LOC100790659 (gma) LOC100794814 (gma) LOC100808438 (gma) LOC100809277 (gma) LOC100810380 (gma) LOC100814679 (gma) LOC100815062 (gma) LOC100816256 (gma) LOC101244298 (sly) LOC101252082 (sly) PL (sly) LOC101254639 (sly) LOC101257697 (sly) LOC101260911 (sly) LOC101263458 (sly) LOC101264881 (sly) LOC101264933 (sly) LOC103828610 (bra) LOC103828688 (bra) LOC103829999 (bra) LOC103831011 (bra) LOC103831201 (bra) LOC103833411 (bra) LOC103834896 (bra) LOC103836561 (bra) LOC103837270 (bra) LOC103837461 (bra) LOC103841243 (bra) LOC103841403 (bra) LOC103843635 (bra) LOC103844229 (bra) LOC103847312 (bra) LOC103850282 (bra) LOC103852424 (bra) LOC103854567 (bra) LOC103855563 (bra) LOC103861505 (bra) LOC103862557 (bra) LOC103863605 (bra) LOC103863641 (bra) LOC103870710 (bra) LOC103873738 (bra) LOC103875221 (bra) LOC112323533 (ppo) LOC123043123 (tae) LOC123044722 (tae) LOC123051018 (tae) LOC123119621 (tae) LOC123180958 (tae) LOC123186967 (tae) LOC123430122 (hvu) LOC123431519 (hvu)

Subcellular
localization
wolf

vacu 4, chlo 2, golg 1, nucl 1, extr 1, E.R. 1, golg_plas 1	(predict for NP_001190720.1)
vacu 4, chlo 3, golg 1, chlo_mito 1	(predict for NP_567409.1)

Subcellular
localization
TargetP

scret 9	(predict for NP_001190720.1)
scret 9	(predict for NP_567409.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	3

Genes directly connected with AT4G13710 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
7.5	GH9C2	glycosyl hydrolase 9C2	[detail]	842747
7.5	EXPA15	expansin A15	[detail]	814838
6.9	AT4G24780	Pectin lyase-like superfamily protein	[detail]	828580
5.0	AT4G20320	CTP synthase family protein	[detail]	827780

Coexpressed
gene list

[Coexpressed gene list for AT4G13710]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

254689_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

254689_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

254689_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	827005
Refseq ID (protein)	NP_001190720.1
Refseq ID (protein)	NP_567409.1

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