[][] ath   AT4G13940 Gene
functional annotation
Function   S-adenosyl-L-homocysteine hydrolase
GO BP
GO:0006346 [list] [network] methylation-dependent chromatin silencing  (7 genes)  IMP  
GO:0006730 [list] [network] one-carbon metabolic process  (29 genes)  IEA  
GO:0016441 [list] [network] posttranscriptional gene silencing  (138 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (547 genes)  IMP NAS  
GO CC
GO:0005774 [list] [network] vacuolar membrane  (624 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005773 [list] [network] vacuole  (1133 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  RCA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0004013 [list] [network] adenosylhomocysteinase activity  (2 genes)  IMP  
GO:0005507 [list] [network] copper ion binding  (185 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath00270 [list] [network] Cysteine and methionine metabolism (121 genes)
Protein NP_001031627.1  NP_001031628.1  NP_001078387.1  NP_193130.1 
BLAST NP_001031627.1  NP_001031628.1  NP_001078387.1  NP_193130.1 
Orthologous [Ortholog page] SAHH (sly)SAHH2 (ath)LOC4350455 (osa)LOC7495837 (ppo)LOC11406131 (mtr)LOC11444163 (mtr)LOC100253872 (vvi)LOC100265604 (vvi)LOC100282150 (zma)LOC100786939 (gma)LOC100787210 (gma)LOC100815953 (gma)LOC101248518 (sly)LOC101259420 (sly)LOC103828704 (bra)LOC103832114 (bra)LOC103833147 (bra)LOC103860008 (bra)LOC103863580 (bra)
Subcellular
localization
wolf
cysk 6,  cyto 1,  nucl 1,  golg 1,  E.R._vacu 1,  cyto_pero 1,  cyto_plas 1  (predict for NP_001031627.1)
cyto 9,  nucl 1,  mito 1  (predict for NP_001031628.1)
cyto 6,  pero 2,  nucl 1,  cysk_nucl 1  (predict for NP_001078387.1)
cyto 6,  chlo 1,  nucl 1  (predict for NP_193130.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001031627.1)
other 8  (predict for NP_001031628.1)
other 8  (predict for NP_001078387.1)
other 8  (predict for NP_193130.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 13
ath01200 Carbon metabolism 6
ath00270 Cysteine and methionine metabolism 6
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ath00010 Glycolysis / Gluconeogenesis 3
Genes directly connected with HOG1 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
9.1 MAT3 methionine adenosyltransferase 3 [detail] 818260
9.0 SHM4 serine hydroxymethyltransferase 4 [detail] 827027
8.2 AT2G45300 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta [detail] 819138
7.6 SAM1 S-adenosylmethionine synthetase 1 [detail] 839501
7.5 SAM-2 S-adenosylmethionine synthetase 2 [detail] 826987
7.2 PDE345 Aldolase superfamily protein [detail] 814643
5.3 AT3G08630 alphavirus core family protein (DUF3411) [detail] 820010
Coexpressed
gene list
[Coexpressed gene list for HOG1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245356_at
245356_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245356_at
245356_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
245356_at
245356_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 827028    
Refseq ID (protein) NP_001031627.1 
NP_001031628.1 
NP_001078387.1 
NP_193130.1 


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