ATTED-II : GeneID search result

[←][→] ath At4g15090 Gene

functional annotation

Function

FRS (FAR1 Related Sequences) transcription factor family

GO BP

GO:0010018 [list] [network] far-red light signaling pathway	(4 genes)	IMP
GO:0042753 [list] [network] positive regulation of circadian rhythm	(12 genes)	IMP
GO:1900056 [list] [network] negative regulation of leaf senescence	(18 genes)	IMP
GO:0010218 [list] [network] response to far red light	(48 genes)	IMP
GO:0010017 [list] [network] red or far-red light signaling pathway	(52 genes)	IMP
GO:0045893 [list] [network] positive regulation of DNA-templated transcription	(272 genes)	IDA
GO:0009639 [list] [network] response to red or far red light	(365 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10305 genes)

IDA ISM

GO MF

GO:0008270 [list] [network] zinc ion binding	(429 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1576 genes)	IDA
GO:0005515 [list] [network] protein binding	(5066 genes)	IPI

KEGG

Protein

NP_001329443.1 NP_001329444.1 NP_001329445.1 NP_001329446.1 NP_567455.4

BLAST

NP_001329443.1 NP_001329444.1 NP_001329445.1 NP_001329446.1 NP_567455.4

Orthologous

[Ortholog page] FRS1 (ath) LOC7495635 (ppo) LOC18097012 (ppo) LOC100792626 (gma) LOC100805377 (gma) LOC100814153 (gma) LOC101248454 (sly) LOC101258392 (sly) LOC103857855 (bra) LOC103871343 (bra) LOC112416729 (mtr)

Subcellular
localization
wolf

nucl 9	(predict for NP_001329443.1)
nucl 9	(predict for NP_001329444.1)
nucl 9	(predict for NP_001329445.1)
nucl 9	(predict for NP_001329446.1)
nucl 9	(predict for NP_567455.4)

Subcellular
localization
TargetP

other 9	(predict for NP_001329443.1)
other 9	(predict for NP_001329444.1)
other 9	(predict for NP_001329445.1)
other 9	(predict for NP_001329446.1)
other 9	(predict for NP_567455.4)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2

Genes directly connected with FAR1 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
6.2	AT5G27240	DNAJ heat shock N-terminal domain-containing protein	[detail]	832782
6.0	AT2G45700	sterile alpha motif (SAM) domain-containing protein	[detail]	819178
5.9	PCFS4	PCF11P-similar protein 4	[detail]	825827

Coexpressed
gene list

[Coexpressed gene list for FAR1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

245256_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

245256_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

245256_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	827173
Refseq ID (protein)	NP_001329443.1
	NP_001329444.1
	NP_001329445.1
	NP_001329446.1
	NP_567455.4

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