[←][→] ath   At4g15510 Gene
functional annotation
Function   Photosystem II reaction center PsbP family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0048564 [list] [network] photosystem I assembly  (16 genes)  IMP  
GO CC
GO:0009654 [list] [network] photosystem II oxygen evolving complex  (19 genes)  IEA  
GO:0019898 [list] [network] extrinsic component of membrane  (46 genes)  IEA  
GO:0009543 [list] [network] chloroplast thylakoid lumen  (50 genes)  HDA IDA  
GO:0031977 [list] [network] thylakoid lumen  (67 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0005509 [list] [network] calcium ion binding  (132 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001031646.1  NP_001328785.1  NP_001328786.1  NP_567468.1  NP_974555.1 
BLAST NP_001031646.1  NP_001328785.1  NP_001328786.1  NP_567468.1  NP_974555.1 
Orthologous [Ortholog page] LOC4342913 (osa)  LOC4352538 (osa)  LOC7478888 (ppo)  LOC18098559 (ppo)  LOC25499636 (mtr)  LOC100792664 (gma)  LOC101264980 (sly)  LOC103833512 (bra)  LOC103870840 (bra)  LOC123102561 (tae)  LOC123110752 (tae)  LOC123119743 (tae)  LOC123451876 (hvu) 
Subcellular
localization
wolf
chlo 4,  nucl 1,  golg 1,  cyto 1,  mito 1,  plas 1,  extr 1,  cysk_nucl 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001031646.1)
chlo 4,  nucl 1,  golg 1,  cyto 1,  mito 1,  plas 1,  extr 1,  cysk_nucl 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001328785.1)
chlo 4,  nucl 1,  golg 1,  cyto 1,  mito 1,  plas 1,  extr 1,  cysk_nucl 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001328786.1)
chlo 8,  mito 1  (predict for NP_567468.1)
chlo 9,  nucl 1  (predict for NP_974555.1)
Subcellular
localization
TargetP
scret 4  (predict for NP_001031646.1)
scret 4  (predict for NP_001328785.1)
scret 4  (predict for NP_001328786.1)
chlo 8  (predict for NP_567468.1)
chlo 8  (predict for NP_974555.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 12
ath01240 Biosynthesis of cofactors 5
ath00196 Photosynthesis - antenna proteins 2
Genes directly connected with PPD1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.5 CHLI2 magnesium chelatase i2 [detail] 834633
7.4 HEME2 Uroporphyrinogen decarboxylase [detail] 818644
7.2 AT4G27700 Rhodanese/Cell cycle control phosphatase superfamily protein [detail] 828884
Coexpressed
gene list		 [Coexpressed gene list for PPD1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245368_at
245368_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245368_at
245368_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245368_at
245368_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827223      
Refseq ID (protein) NP_001031646.1 
NP_001328785.1 
NP_001328786.1 
NP_567468.1 
NP_974555.1 


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