[←][→] ath   At4g15560 Gene
functional annotation
Function   Deoxyxylulose-5-phosphate synthase    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0052865 [list] [network] 1-deoxy-D-xylulose 5-phosphate biosynthetic process  (3 genes)  IEA  
GO:0019288 [list] [network] isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway  (8 genes)  TAS  
GO:0015995 [list] [network] chlorophyll biosynthetic process  (56 genes)  IMP  
GO:0016114 [list] [network] terpenoid biosynthetic process  (129 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0008661 [list] [network] 1-deoxy-D-xylulose-5-phosphate synthase activity  (3 genes)  IDA  
GO:0042802 [list] [network] identical protein binding  (404 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath00730 [list] [network] Thiamine metabolism (21 genes)
ath00900 [list] [network] Terpenoid backbone biosynthesis (61 genes)
Protein NP_193291.1 
BLAST NP_193291.1 
Orthologous [Ortholog page] DXS (sly)  DXPS1 (ath)  LOC4338768 (osa)  LOC4342614 (osa)  LOC7469091 (ppo)  LOC11405342 (mtr)  LOC11438335 (mtr)  LOC11441515 (mtr)  LOC18100536 (ppo)  LOC18101075 (ppo)  LOC18102278 (ppo)  LOC25501402 (mtr)  DXS1 (gma)  LOC100776569 (gma)  LOC100786607 (gma)  LOC100789279 (gma)  LOC100798930 (gma)  LOC100799481 (gma)  LOC100799983 (gma)  LOC100814637 (gma)  dxs2 (sly)  LOC103859911 (bra)  LOC103860788 (bra)  LOC103870527 (bra)  LOC112327902 (ppo)  LOC123038305 (tae)  LOC123039743 (tae)  LOC123055375 (tae)  LOC123098267 (tae)  LOC123132478 (tae)  LOC123175967 (tae)  LOC123181002 (tae)  LOC123181992 (tae)  LOC123418768 (hvu)  LOC123431353 (hvu)  LOC123441346 (hvu) 
Subcellular
localization
wolf
chlo 9,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_193291.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_193291.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 7
ath00900 Terpenoid backbone biosynthesis 2
Genes directly connected with CLA1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.3 AT1G74470 Pyridine nucleotide-disulfide oxidoreductase family protein [detail] 843788
8.6 HCF107 high chlorophyll fluorescent 107 [detail] 820961
7.8 GUN5 magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) [detail] 831207
7.5 CRY1 cryptochrome 1 [detail] 826470
6.4 CARAB-AK-LYS Aspartate kinase family protein [detail] 831255
6.1 AT3G54460 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein [detail] 824611
Coexpressed
gene list		 [Coexpressed gene list for CLA1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245281_at
245281_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245281_at
245281_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245281_at
245281_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827230      
Refseq ID (protein) NP_193291.1 


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