[][] ath   AT4G16390 Gene
functional annotation
Function   pentatricopeptide (PPR) repeat-containing protein
GO BP
GO:0031425 [list] [network] chloroplast RNA processing  (22 genes)  IMP  
GO:0045727 [list] [network] positive regulation of translation  (26 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (194 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  HDA IBA IDA ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0000166 [list] [network] nucleotide binding  (2618 genes)  IEA  
KEGG
Protein NP_193372.6 
BLAST NP_193372.6 
Orthologous [Ortholog page] LOC4332063 (osa)LOC7474081 (ppo)LOC11437309 (mtr)LOC25486257 (mtr)LOC25486258 (mtr)LOC100191483 (zma)LOC100259703 (vvi)LOC100794718 (gma)LOC100795559 (gma)LOC100819233 (gma)LOC101258591 (sly)LOC101264082 (sly)LOC103849518 (bra)LOC103869700 (bra)
Subcellular
localization
wolf
chlo 10  (predict for NP_193372.6)
Subcellular
localization
TargetP
chlo 8  (predict for NP_193372.6)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with SVR7 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
9.8 MEE40 Pentatricopeptide repeat (PPR) superfamily protein [detail] 824537
9.6 PTAC2 plastid transcriptionally active 2 [detail] 843824
9.3 AT5G46580 pentatricopeptide (PPR) repeat-containing protein [detail] 834701
9.1 AT2G41950 DNA-directed RNA polymerase subunit beta [detail] 818795
8.9 MURE ALBINO OR PALE-GREEN 13 [detail] 842672
8.5 AT3G02450 cell division protein ftsH [detail] 821139
8.3 EMB1923 embryo defective 1923 [detail] 828936
7.9 AT5G07900 Mitochondrial transcription termination factor family protein [detail] 830684
7.9 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein [detail] 837522
7.5 OCP3 overexpressor of cationic peroxidase 3 [detail] 830997
7.1 ASE2 GLN phosphoribosyl pyrophosphate amidotransferase 2 [detail] 829626
6.9 AT5G20130 sulfate adenylyltransferase subunit [detail] 832135
6.6 AT3G61770 Acid phosphatase/vanadium-dependent haloperoxidase-related protein [detail] 825350
6.6 AT5G55510 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [detail] 835645
Coexpressed
gene list
[Coexpressed gene list for SVR7]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245494_at
245494_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245494_at
245494_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
245494_at
245494_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 827333    
Refseq ID (protein) NP_193372.6 


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