[←][→] ath   At4g16520 Gene
functional annotation
Function   Ubiquitin-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0090558 [list] [network] plant epidermis development  (635 genes)  IEA  
GO:0010015 [list] [network] root morphogenesis  (669 genes)  IEA  
GO:0048589 [list] [network] developmental growth  (1060 genes)  IEA  
GO:0044248 [list] [network] cellular catabolic process  (1086 genes)  IEA  
GO CC
GO:0005776 [list] [network] autophagosome  (22 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath04136 [list] [network] Autophagy - other (41 genes)
Protein NP_001329226.1  NP_567504.1  NP_849395.1 
BLAST NP_001329226.1  NP_567504.1  NP_849395.1 
Orthologous
Subcellular
localization
wolf
cyto 6,  extr 3,  cyto_pero 3,  cyto_E.R. 3  (predict for NP_001329226.1)
nucl 6,  cysk_nucl 4,  cyto 3  (predict for NP_567504.1)
nucl 6,  cysk_nucl 4,  cyto 3  (predict for NP_849395.1)
Subcellular
localization
TargetP
scret 9,  other 3  (predict for NP_001329226.1)
other 8  (predict for NP_567504.1)
other 8  (predict for NP_849395.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 5
ath04120 Ubiquitin mediated proteolysis 2
ath00564 Glycerophospholipid metabolism 2
ath00592 alpha-Linolenic acid metabolism 2
Genes directly connected with ATG8F on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.6 UBC5 ubiquitin-conjugating enzyme 5 [detail] 842683
10.3 AT1G15740 Leucine-rich repeat family protein [detail] 838143
9.6 AT5G18630 alpha/beta-Hydrolases superfamily protein [detail] 831981
9.4 APG8H Ubiquitin-like superfamily protein [detail] 820798
9.2 AT2G04690 Pyridoxamine 5'-phosphate oxidase family protein [detail] 815012
8.6 AT1G19660 Wound-responsive family protein [detail] 838553
6.7 AT2G35680 Phosphotyrosine protein phosphatases superfamily protein [detail] 818137
6.2 UBC6 ubiquitin-conjugating enzyme 6 [detail] 819211
5.0 AT2G32090 Lactoylglutathione lyase / glyoxalase I family protein [detail] 817769
Coexpressed
gene list		 [Coexpressed gene list for ATG8F]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245391_at
245391_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245391_at
245391_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245391_at
245391_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827351      
Refseq ID (protein) NP_001329226.1 
NP_567504.1 
NP_849395.1 


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