ATTED-II : GeneID search result

[←][→] ath AT4G16860 Gene

functional annotation

Function

Disease resistance protein (TIR-NBS-LRR class) family

GO BP

GO:0009817 [list] [network] defense response to fungus, incompatible interaction	(50 genes)	ISS
GO:0006952 [list] [network] defense response	(1420 genes)	TAS

GO CC

GO:0009507 [list] [network] chloroplast	(5095 genes)	ISM
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM

GO MF

GO:0030275 [list] [network] LRR domain binding

(2 genes)

ISS

KEGG

Protein

NP_001328661.1 NP_193420.2

BLAST

NP_001328661.1 NP_193420.2

Orthologous

[Ortholog page] AT2G14080 (ath) AT2G16870 (ath) AT3G04210 (ath) AT3G04220 (ath) AT3G44400 (ath) AT3G44670 (ath) AT4G08450 (ath) AT4G11170 (ath) AT4G14370 (ath) SNC1 (ath) AT4G16900 (ath) AT4G16920 (ath) AT4G16940 (ath) RPP5 (ath) AT4G16960 (ath) AT5G11250 (ath) AT5G17970 (ath) AT5G18350 (ath) AT5G18360 (ath) AT5G18370 (ath) AT5G22690 (ath) AT5G38340 (ath) AT5G38850 (ath) AT5G40060 (ath) AT5G40910 (ath) AT5G41540 (ath) AT5G41550 (ath) AT5G41740 (ath) AT5G41750 (ath) TAO1 (ath) AT5G46260 (ath) AT5G46270 (ath) AT5G46450 (ath) RPS6 (ath) AT5G46490 (ath) AT5G46510 (ath) AT5G46520 (ath) AT5G49140 (ath) AT5G51630 (ath) AT5G58120 (ath) AT1G31540 (ath) WRR4 (ath) AT1G56520 (ath) AT1G56540 (ath) AT1G63730 (ath) AT1G63740 (ath) AT1G63750 (ath) AT1G63870 (ath) AT1G63880 (ath) RLM1 (ath) AT1G65850 (ath) AT1G63860 (ath) LOC103827870 (bra) LOC103828261 (bra) RGA9 (bra) LOC103831137 (bra) LOC103834349 (bra) LOC103838097 (bra) LOC103838106 (bra) LOC103838107 (bra) LOC103838108 (bra) LOC103838111 (bra) LOC103838316 (bra) LOC103838330 (bra) LOC103838480 (bra) LOC103839222 (bra) LOC103839595 (bra) LOC103839607 (bra) LOC103839608 (bra) LOC103841070 (bra) LOC103845886 (bra) LOC103846927 (bra) LOC103848010 (bra) LOC103848931 (bra) LOC103850223 (bra) LOC103850388 (bra) LOC103851141 (bra) LOC103852503 (bra) LOC103853706 (bra) LOC103853710 (bra) LOC103853713 (bra) LOC103853747 (bra) LOC103854248 (bra) LOC103855905 (bra) LOC103855958 (bra) LOC103856441 (bra) LOC103857384 (bra) LOC103859130 (bra) LOC103860884 (bra) LOC103860885 (bra) LOC103864117 (bra) LOC103864602 (bra) LOC103865164 (bra) LOC108871093 (bra)

Subcellular
localization
wolf

cyto 4, cyto_nucl 4, nucl 3, plas 1, pero 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1	(predict for NP_001328661.1)
chlo 3, nucl 3, cyto 3, cyto_nucl 3	(predict for NP_193420.2)

Subcellular
localization
TargetP

other 8	(predict for NP_001328661.1)
chlo 4	(predict for NP_193420.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with RPP4 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
17.0	SNC1	TIR-NBS-LRR class disease resistance protein	[detail]	827397
15.3	RPP5	Disease resistance protein (TIR-NBS-LRR class) family	[detail]	827403
11.0	AT4G16857	disease resistance protein (TIR-NBS-LRR class) family protein	[detail]	28720138
9.0	AT4G16880	Leucine-rich repeat (LRR) family protein	[detail]	827396
6.9	AT1G63880	Disease resistance protein (TIR-NBS-LRR class) family	[detail]	842692
5.6	AT2G14080	Disease resistance protein (TIR-NBS-LRR class) family	[detail]	815893
5.5	AT5G43440	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	[detail]	834364

Coexpressed
gene list

[Coexpressed gene list for RPP4]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

245448_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

245448_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

245448_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	827395
Refseq ID (protein)	NP_001328661.1
Refseq ID (protein)	NP_193420.2

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