[←][→] ath   AT4G19490 Gene
functional annotation
Function   VPS54  
GO BP
GO:0006896 [list] [network] Golgi to vacuole transport  (19 genes)  IBA  
GO:0042147 [list] [network] retrograde transport, endosome to Golgi  (24 genes)  IBA  
GO CC
GO:0000938 [list] [network] GARP complex  (6 genes)  IBA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  ISM  
GO:0005829 [list] [network] cytosol  (3506 genes)  RCA  
GO MF
GO:0019905 [list] [network] syntaxin binding  (6 genes)  IBA  
KEGG
Protein NP_193684.4  NP_849409.2 
BLAST NP_193684.4  NP_849409.2 
Orthologous [Ortholog page] LOC7455043 (ppo)  LOC7491388 (ppo)  LOC9267478 (osa)  LOC25486692 (mtr)  LOC100192923 (zma)  LOC100264854 (vvi)  LOC100777704 (gma)  LOC100804432 (gma)  LOC101243942 (sly)  LOC101265887 (sly)  LOC103646811 (zma)  LOC103857441 (bra)  LOC103861057 (bra) 
Subcellular
localization
wolf
chlo 4,  nucl 4,  cysk 1  (predict for NP_193684.4)
chlo 4,  nucl 4,  cysk 1  (predict for NP_849409.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_193684.4)
chlo 9  (predict for NP_849409.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with VPS54 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
15.8 AT4G19500 nucleoside-triphosphatase/transmembrane receptor/nucleotide binding/ATP binding protein [detail] 827691
11.5 AT4G19520 disease resistance protein (TIR-NBS-LRR class) family [detail] 827694
8.6 AT4G19530 disease resistance protein (TIR-NBS-LRR class) family [detail] 827695
6.7 AT4G19510 Disease resistance protein (TIR-NBS-LRR class) [detail] 827692
Coexpressed
gene list		 [Coexpressed gene list for VPS54]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254584_at
254584_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254584_at
254584_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254584_at
254584_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827690      
Refseq ID (protein) NP_193684.4 
NP_849409.2 


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