[←][→] ath   At4g19490 Gene
functional annotation
Function   VPS54      
GO BP
GO CC
GO:0000938 [list] [network] GARP complex  (4 genes)  IDA  
GO:0000139 [list] [network] Golgi membrane  (37 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1182 genes)  ISM  
GO:0005829 [list] [network] cytosol  (2559 genes)  RCA  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_193684.4  NP_849409.2 
BLAST NP_193684.4  NP_849409.2 
Orthologous [Ortholog page] LOC7455043 (ppo)  LOC7491388 (ppo)  LOC9267478 (osa)  LOC25486692 (mtr)  LOC100777704 (gma)  LOC100804432 (gma)  LOC101243942 (sly)  LOC101265887 (sly)  LOC103857441 (bra)  LOC103861057 (bra)  LOC123043443 (tae)  LOC123055579 (tae)  LOC123187266 (tae)  LOC123424486 (hvu) 
Subcellular
localization
wolf
chlo 4,  nucl 4,  cysk 1  (predict for NP_193684.4)
chlo 4,  nucl 4,  cysk 1  (predict for NP_849409.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_193684.4)
chlo 9  (predict for NP_849409.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with VPS54 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.6 AT3G61480 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor [detail] 825321
8.9 SEC8 subunit of exocyst complex 8 [detail] 820201
8.9 AT2G27900 coiled-coil protein [detail] 817335
7.9 AT5G28350 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor [detail] 832920
Coexpressed
gene list		 [Coexpressed gene list for VPS54]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254584_at
254584_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254584_at
254584_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254584_at
254584_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827690      
Refseq ID (protein) NP_193684.4 
NP_849409.2 


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