[←][→] ath   AT4G21070 Gene
functional annotation
Function   breast cancer susceptibility1  
GO BP
GO:0071158 [list] [network] positive regulation of cell cycle arrest  (2 genes)  IBA  
GO:0035066 [list] [network] positive regulation of histone acetylation  (3 genes)  IBA  
GO:0045717 [list] [network] negative regulation of fatty acid biosynthetic process  (3 genes)  IBA  
GO:0071480 [list] [network] cellular response to gamma radiation  (4 genes)  IEP  
GO:0035067 [list] [network] negative regulation of histone acetylation  (6 genes)  IBA  
GO:0010332 [list] [network] response to gamma radiation  (16 genes)  IEP  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (68 genes)  IBA IMP  
GO:0006310 [list] [network] DNA recombination  (143 genes)  IMP  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (206 genes)  IBA  
GO:0006281 [list] [network] DNA repair  (295 genes)  IMP  
GO CC
GO:0031436 [list] [network] BRCA1-BARD1 complex  (1 genes)  IBA  
GO:0070531 [list] [network] BRCA1-A complex  (4 genes)  IBA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (434 genes)  IBA IDA  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03440 [list] [network] Homologous recombination (67 genes)
Protein NP_193839.4 
BLAST NP_193839.4 
Orthologous [Ortholog page] LOC4339293 (osa)  LOC7470812 (ppo)  LOC25486045 (mtr)  LOC100256563 (vvi)  LOC100789372 (gma)  LOC100804958 (gma)  LOC101256694 (sly)  LOC103630583 (zma)  LOC103834209 (bra)  LOC103858702 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_193839.4)
Subcellular
localization
TargetP
other 6  (predict for NP_193839.4)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 6
ath03030 DNA replication 4
ath00240 Pyrimidine metabolism 3
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 2
Genes directly connected with BRCA1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
15.2 AT4G02110 transcription coactivator [detail] 828135
13.4 RAD51 RAS associated with diabetes protein 51 [detail] 832208
12.4 GR1 protein gamma response 1 [detail] 824375
10.8 TIL1 DNA polymerase epsilon catalytic subunit [detail] 837346
7.8 AT4G19130 Replication factor-A protein 1-like protein [detail] 827651
7.6 AHP2 Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP) [detail] 837893
6.6 TK1a Thymidine kinase [detail] 819971
Coexpressed
gene list		 [Coexpressed gene list for BRCA1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254443_at
254443_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254443_at
254443_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254443_at
254443_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827854      
Refseq ID (protein) NP_193839.4 


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