[][] ath   AT4G21560 Gene
functional annotation
Function   vacuolar protein sorting-associated protein-like protein
GO BP
GO:0043328 [list] [network] protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  (6 genes)  IBA  
GO CC
GO:0000813 [list] [network] ESCRT I complex  (8 genes)  IBA ISS  
GO:0005802 [list] [network] trans-Golgi network  (298 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0044877 [list] [network] protein-containing complex binding  (181 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04144 [list] [network] Endocytosis (144 genes)
Protein NP_001320024.1  NP_193887.1  NP_974585.1 
BLAST NP_001320024.1  NP_193887.1  NP_974585.1 
Orthologous [Ortholog page] VPS28-2 (ath)LOC4327840 (osa)LOC7494341 (ppo)LOC11439388 (mtr)LOC100284642 (zma)LOC100500366 (gma)LOC100814037 (gma)LOC101255562 (sly)LOC101258121 (sly)LOC103651140 (zma)LOC103834189 (bra)LOC103839783 (bra)LOC103859151 (bra)
Subcellular
localization
wolf
chlo 4,  nucl_plas 3,  nucl 3,  plas 2,  cyto 1  (predict for NP_001320024.1)
chlo 4,  nucl_plas 3,  nucl 3,  plas 2,  cyto 1  (predict for NP_193887.1)
chlo 4,  nucl_plas 3,  nucl 3,  plas 2,  cyto 1  (predict for NP_974585.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001320024.1)
other 9  (predict for NP_193887.1)
other 9  (predict for NP_974585.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with VPS28-1 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
6.2 AT3G29170 transmembrane protein (DUF872) [detail] 822567
6.1 SAP7 A20/AN1-like zinc finger family protein [detail] 826812
6.1 AT3G45040 phosphatidate cytidylyltransferase family protein [detail] 823639
6.1 DER2.2 DERLIN-2.2 [detail] 825823
5.4 AT3G06760 Drought-responsive family protein [detail] 819861
4.8 AT1G75400 RING/U-box superfamily protein [detail] 843876
Coexpressed
gene list
[Coexpressed gene list for VPS28-1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254422_at
254422_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254422_at
254422_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
254422_at
254422_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 828241    
Refseq ID (protein) NP_001320024.1 
NP_193887.1 
NP_974585.1 


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