[←][→] ath   At4g22890 Gene
functional annotation
Function   PGR5-LIKE A    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009773 [list] [network] photosynthetic electron transport in photosystem I  (17 genes)  IGI IMP  
GO:0015979 [list] [network] photosynthesis  (167 genes)  IGI  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA IDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0016730 [list] [network] oxidoreductase activity, acting on iron-sulfur proteins as donors  (11 genes)  IDA  
GO:0042802 [list] [network] identical protein binding  (404 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001078431.1  NP_001078432.1  NP_001320036.1  NP_567672.1  NP_849423.1 
BLAST NP_001078431.1  NP_001078432.1  NP_001320036.1  NP_567672.1  NP_849423.1 
Orthologous [Ortholog page] PGRL1B (ath)  LOC4334845 (osa)  LOC4346096 (osa)  LOC7479243 (ppo)  LOC7490927 (ppo)  LOC11436266 (mtr)  LOC25493634 (mtr)  LOC100784314 (gma)  LOC100785186 (gma)  LOC100810598 (gma)  LOC101247736 (sly)  LOC101251312 (sly)  LOC103858614 (bra)  LOC103860435 (bra)  LOC103861343 (bra)  LOC123087488 (tae)  LOC123114448 (tae)  LOC123395217 (hvu) 
Subcellular
localization
wolf
chlo 4,  chlo_mito 4,  mito 2,  plas 1,  E.R. 1,  E.R._plas 1  (predict for NP_001078431.1)
chlo 4,  chlo_mito 4,  mito 2,  plas 1,  E.R. 1,  E.R._plas 1  (predict for NP_001078432.1)
chlo 5,  chlo_mito 4,  mito 2,  E.R. 1  (predict for NP_001320036.1)
chlo 4,  chlo_mito 4,  mito 2,  plas 1,  E.R. 1,  E.R._plas 1  (predict for NP_567672.1)
chlo 4,  chlo_mito 4,  mito 2,  plas 1,  E.R. 1,  E.R._plas 1  (predict for NP_849423.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001078431.1)
chlo 9  (predict for NP_001078432.1)
chlo 9  (predict for NP_001320036.1)
chlo 9  (predict for NP_567672.1)
chlo 9  (predict for NP_849423.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00630 Glyoxylate and dicarboxylate metabolism 5
ath01200 Carbon metabolism 4
ath01230 Biosynthesis of amino acids 4
ath00260 Glycine, serine and threonine metabolism 3
ath00220 Arginine biosynthesis 2
Genes directly connected with PGR5-LIKE A on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.7 AT1G18060 microbial collagenase [detail] 838386
9.6 SHM1 serine transhydroxymethyltransferase 1 [detail] 829949
9.2 TRXF1 thioredoxin F-type 1 [detail] 821260
9.0 AT1G29700 Metallo-hydrolase/oxidoreductase superfamily protein [detail] 839847
8.2 AT1G16080 nuclear protein [detail] 838178
7.1 DXR 1-deoxy-D-xylulose 5-phosphate reductoisomerase [detail] 836400
Coexpressed
gene list		 [Coexpressed gene list for PGR5-LIKE A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254298_at
254298_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254298_at
254298_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254298_at
254298_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828388      
Refseq ID (protein) NP_001078431.1 
NP_001078432.1 
NP_001320036.1 
NP_567672.1 
NP_849423.1 


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