[←][→] ath   At4g24490 Gene
functional annotation
Function   RAB geranylgeranyl transferase alpha subunit 1    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0018344 [list] [network] protein geranylgeranylation  (5 genes)  IDA  
GO CC
GO:0005968 [list] [network] Rab-protein geranylgeranyltransferase complex  (4 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0004663 [list] [network] Rab geranylgeranyltransferase activity  (4 genes)  IDA  
KEGG
Protein NP_001078443.1  NP_194180.2 
BLAST NP_001078443.1  NP_194180.2 
Orthologous [Ortholog page] RGTA2 (ath)  LOC4341838 (osa)  LOC7462243 (ppo)  LOC11423207 (mtr)  LOC100780581 (gma)  LOC100783193 (gma)  LOC100807900 (gma)  LOC101257956 (sly)  LOC103861487 (bra)  LOC103862144 (bra)  LOC123149079 (tae)  LOC123156411 (tae)  LOC123165328 (tae)  LOC123413324 (hvu) 
Subcellular
localization
wolf
nucl 4,  mito 3,  cyto 2,  nucl_plas 2  (predict for NP_001078443.1)
nucl 4,  mito 3,  cyto 2,  nucl_plas 2  (predict for NP_194180.2)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for NP_001078443.1)
other 4,  mito 3  (predict for NP_194180.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 3
ath04141 Protein processing in endoplasmic reticulum 3
ath00510 N-Glycan biosynthesis 2
ath00513 Various types of N-glycan biosynthesis 2
Genes directly connected with RGTA1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.4 AT5G45620 Proteasome component (PCI) domain protein [detail] 834602
7.3 AT2G27460 sec23/sec24 transport family protein [detail] 817291
7.1 AT5G43670 Sec23/Sec24 protein transport family protein [detail] 834387
6.0 HSFA1D heat shock transcription factor A1D [detail] 840125
5.9 SEC15A exocyst complex component sec15A [detail] 824831
5.7 NTMC2T2.1 Calcium-dependent lipid-binding (CaLB domain) family protein [detail] 837052
Coexpressed
gene list		 [Coexpressed gene list for RGTA1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254156_at
254156_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254156_at
254156_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254156_at
254156_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828551      
Refseq ID (protein) NP_001078443.1 
NP_194180.2 


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