[←][→] ath   AT4G24490 Gene
functional annotation
Function   RAB geranylgeranyl transferase alpha subunit 1  
GO BP
GO:0018344 [list] [network] protein geranylgeranylation  (7 genes)  IBA IDA  
GO:0046686 [list] [network] response to cadmium ion  (346 genes)  IEP  
GO CC
GO:0005968 [list] [network] Rab-protein geranylgeranyltransferase complex  (5 genes)  IBA IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0004663 [list] [network] Rab geranylgeranyltransferase activity  (4 genes)  IBA IDA  
KEGG
Protein NP_001078443.1  NP_194180.2 
BLAST NP_001078443.1  NP_194180.2 
Orthologous [Ortholog page] RGTA2 (ath)  LOC4341838 (osa)  LOC7462243 (ppo)  LOC11423207 (mtr)  LOC100248920 (vvi)  LOC100285137 (zma)  LOC100501641 (zma)  LOC100780581 (gma)  LOC100783193 (gma)  LOC100807900 (gma)  LOC101257956 (sly)  LOC103861487 (bra)  LOC103862144 (bra) 
Subcellular
localization
wolf
nucl 4,  mito 3,  cyto 2,  nucl_plas 2  (predict for NP_001078443.1)
nucl 4,  mito 3,  cyto 2,  nucl_plas 2  (predict for NP_194180.2)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for NP_001078443.1)
other 4,  mito 3  (predict for NP_194180.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 8
ath00510 N-Glycan biosynthesis 7
ath00513 Various types of N-glycan biosynthesis 6
Genes directly connected with RGTA1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.0 AT2G27460 sec23/sec24 transport family protein [detail] 817291
7.4 AT5G43670 Sec23/Sec24 protein transport family protein [detail] 834387
6.7 HAP6 ribophorin II (RPN2) family protein [detail] 827863
6.5 SEC15A exocyst complex component sec15A [detail] 824831
5.5 HSFA1D heat shock transcription factor A1D [detail] 840125
Coexpressed
gene list		 [Coexpressed gene list for RGTA1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254156_at
254156_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254156_at
254156_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254156_at
254156_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828551      
Refseq ID (protein) NP_001078443.1 
NP_194180.2 


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