[←][→] ath   At4g24500 Gene
functional annotation
Function   hydroxyproline-rich glycoprotein family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:1903730 [list] [network] regulation of phosphatidate phosphatase activity  (1 genes)  IGI  
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (8 genes)  IMP  
GO:0000380 [list] [network] alternative mRNA splicing, via spliceosome  (10 genes)  IMP  
GO:0009649 [list] [network] entrainment of circadian clock  (12 genes)  IEP IMP  
GO:1901703 [list] [network] protein localization involved in auxin polar transport  (14 genes)  IGI  
GO:0035196 [list] [network] miRNA processing  (29 genes)  IMP  
GO:0030422 [list] [network] siRNA processing  (30 genes)  IMP  
GO:2000012 [list] [network] regulation of auxin polar transport  (33 genes)  IGI  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (105 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (123 genes)  IEP IMP  
GO:0009409 [list] [network] response to cold  (472 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (607 genes)  IMP  
GO CC
GO:0016604 [list] [network] nuclear body  (86 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (387 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001190822.1  NP_001320056.1  NP_567704.1 
BLAST NP_001190822.1  NP_001320056.1  NP_567704.1 
Orthologous [Ortholog page] LOC4329451 (osa)  LOC7486549 (ppo)  LOC11437138 (mtr)  LOC18096260 (ppo)  LOC100775211 (gma)  LOC101249715 (sly)  LOC101257364 (sly)  LOC102669819 (gma)  LOC103861490 (bra)  LOC103862154 (bra)  LOC123060987 (tae)  LOC123138093 (tae)  LOC123182479 (tae)  LOC123413437 (hvu) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001190822.1)
nucl 9  (predict for NP_001320056.1)
nucl 10  (predict for NP_567704.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001190822.1)
other 8  (predict for NP_001320056.1)
other 9  (predict for NP_567704.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03015 mRNA surveillance pathway 2
Genes directly connected with SIC on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.5 MAC5B CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [detail] 817507
6.3 AT5G65540 transcription initiation factor TFIID subunit [detail] 836680
6.2 SMU1 transducin family protein / WD-40 repeat family protein [detail] 843707
5.5 AT1G03687 DTW domain-containing protein [detail] 839052
5.0 AT3G11890 Sterile alpha motif (SAM) domain-containing protein [detail] 820362
Coexpressed
gene list		 [Coexpressed gene list for SIC]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254124_at
254124_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254124_at
254124_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254124_at
254124_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828552      
Refseq ID (protein) NP_001190822.1 
NP_001320056.1 
NP_567704.1 


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