[←][→] ath   At4g24780 Gene
functional annotation
Function   Pectin lyase-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0045490 [list] [network] pectin catabolic process  (78 genes)  IEA  
GO:0009624 [list] [network] response to nematode  (86 genes)  IMP  
GO CC
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (25 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (284 genes)  ISS  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
Protein NP_001190827.1  NP_567707.1 
BLAST NP_001190827.1  NP_567707.1 
Orthologous [Ortholog page] 9612 (sly)  AT3G07010 (ath)  AT3G24230 (ath)  AT3G24670 (ath)  AT3G27400 (ath)  AT3G53190 (ath)  PMR6 (ath)  AT4G13210 (ath)  AT4G13710 (ath)  AT5G04310 (ath)  AT5G48900 (ath)  AT5G63180 (ath)  AT1G04680 (ath)  AT1G67750 (ath)  LOC4335013 (osa)  LOC4348800 (osa)  LOC7453817 (ppo)  LOC7458080 (ppo)  LOC7460526 (ppo)  LOC7467675 (ppo)  LOC7468445 (ppo)  LOC7469382 (ppo)  LOC7477066 (ppo)  LOC7479851 (ppo)  LOC7481246 (ppo)  LOC7488611 (ppo)  LOC7494805 (ppo)  LOC11408829 (mtr)  LOC11409358 (mtr)  LOC11411484 (mtr)  LOC11426383 (mtr)  LOC18100132 (ppo)  LOC25483116 (mtr)  LOC25483947 (mtr)  LOC25485548 (mtr)  LOC25489517 (mtr)  LOC25499338 (mtr)  LOC100101868 (gma)  LOC100775595 (gma)  LOC100779940 (gma)  LOC100781845 (gma)  LOC100782388 (gma)  LOC100787082 (gma)  LOC100789303 (gma)  LOC100790659 (gma)  LOC100794814 (gma)  LOC100808438 (gma)  LOC100809277 (gma)  LOC100810380 (gma)  LOC100814679 (gma)  LOC100815062 (gma)  LOC100816256 (gma)  LOC101244298 (sly)  LOC101252082 (sly)  PL (sly)  LOC101254639 (sly)  LOC101257697 (sly)  LOC101260911 (sly)  LOC101263458 (sly)  LOC101264881 (sly)  LOC101264933 (sly)  LOC103828610 (bra)  LOC103828688 (bra)  LOC103829999 (bra)  LOC103831011 (bra)  LOC103831201 (bra)  LOC103833411 (bra)  LOC103834896 (bra)  LOC103836561 (bra)  LOC103837270 (bra)  LOC103837461 (bra)  LOC103841243 (bra)  LOC103841403 (bra)  LOC103843635 (bra)  LOC103844229 (bra)  LOC103847312 (bra)  LOC103850282 (bra)  LOC103852424 (bra)  LOC103854567 (bra)  LOC103855563 (bra)  LOC103861505 (bra)  LOC103862557 (bra)  LOC103863605 (bra)  LOC103863641 (bra)  LOC103870710 (bra)  LOC103873738 (bra)  LOC103875221 (bra)  LOC112323533 (ppo)  LOC123043123 (tae)  LOC123044722 (tae)  LOC123051018 (tae)  LOC123119621 (tae)  LOC123180958 (tae)  LOC123186967 (tae)  LOC123430122 (hvu)  LOC123431519 (hvu) 
Subcellular
localization
wolf
cyto 4,  extr 2,  cyto_plas 2,  nucl 1,  mito 1  (predict for NP_001190827.1)
cyto 4,  extr 2,  cyto_plas 2,  nucl 1,  mito 1  (predict for NP_567707.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001190827.1)
scret 9  (predict for NP_567707.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 3
Genes directly connected with AT4G24780 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.5 EXPB3 expansin B3 [detail] 828940
8.6 EXPA15 expansin A15 [detail] 814838
8.6 EXPA4 expansin A4 [detail] 818553
8.2 EXPA1 expansin A1 [detail] 843288
8.1 EXPA6 expansin A6 [detail] 817444
6.9 AT4G13710 Pectin lyase-like superfamily protein [detail] 827005
6.3 PLP6 PATATIN-like protein 6 [detail] 818507
5.5 AT1G77400 extensin-like protein [detail] 844076
5.4 AT4G24790 AAA-type ATPase family protein [detail] 828581
5.1 AT3G22540 hypothetical protein (DUF1677) [detail] 821825
4.8 AT4G12980 Auxin-responsive family protein [detail] 826910
Coexpressed
gene list		 [Coexpressed gene list for AT4G24780]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254119_at
254119_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254119_at
254119_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254119_at
254119_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828580      
Refseq ID (protein) NP_001190827.1 
NP_567707.1 


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