[←][→] ath   AT4G25500 Gene
functional annotation
Function   arginine/serine-rich splicing factor 35  
GO BP
GO:0031053 [list] [network] primary miRNA processing  (12 genes)  IGI  
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  ISS  
GO:0008380 [list] [network] RNA splicing  (272 genes)  NAS  
GO CC
GO:0010445 [list] [network] nuclear dicing body  (6 genes)  IDA  
GO:0016607 [list] [network] nuclear speck  (86 genes)  IBA IDA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001078447.1  NP_001190837.1  NP_001320063.1  NP_001328585.1  NP_001328586.1  NP_001328587.1  NP_194280.1  NP_974616.2 
BLAST NP_001078447.1  NP_001190837.1  NP_001320063.1  NP_001328585.1  NP_001328586.1  NP_001328587.1  NP_194280.1  NP_974616.2 
Orthologous [Ortholog page] RS41 (ath)  LOC4328133 (osa)  LOC7454468 (ppo)  LOC7464900 (ppo)  LOC7482121 (ppo)  LOC11422261 (mtr)  LOC25500953 (mtr)  LOC100193841 (zma)  LOC100262670 (vvi)  LOC100281308 (zma)  LOC100781534 (gma)  LOC100796509 (gma)  LOC100797778 (gma)  LOC100815452 (gma)  LOC101246991 (sly)  LOC101263057 (sly)  LOC101264097 (sly)  LOC103834867 (bra)  LOC103857154 (bra)  LOC103863268 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001078447.1)
nucl 10  (predict for NP_001190837.1)
nucl 10  (predict for NP_001320063.1)
nucl 10  (predict for NP_001328585.1)
nucl 10  (predict for NP_001328586.1)
nucl 10  (predict for NP_001328587.1)
nucl 10  (predict for NP_194280.1)
nucl 10  (predict for NP_974616.2)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_001078447.1)
other 9  (predict for NP_001190837.1)
scret 6  (predict for NP_001320063.1)
scret 6  (predict for NP_001328585.1)
scret 6  (predict for NP_001328586.1)
other 8,  chlo 3  (predict for NP_001328587.1)
other 9  (predict for NP_194280.1)
scret 6  (predict for NP_974616.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
Genes directly connected with RS40 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.0 RS41 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 835279
6.2 BPC6 basic pentacysteine 6 [detail] 834259
6.1 UNE16 Homeodomain-like superfamily protein [detail] 826998
5.9 AT2G04865 Aminotransferase-like, plant mobile domain family protein [detail] 815033
Coexpressed
gene list		 [Coexpressed gene list for RS40]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254073_at
254073_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254073_at
254073_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254073_at
254073_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828654      
Refseq ID (protein) NP_001078447.1 
NP_001190837.1 
NP_001320063.1 
NP_001328585.1 
NP_001328586.1 
NP_001328587.1 
NP_194280.1 
NP_974616.2 


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