[←][→] ath   At4g25500 Gene
functional annotation
Function   arginine/serine-rich splicing factor 35    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0031053 [list] [network] primary miRNA processing  (9 genes)  IGI  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (105 genes)  ISS  
GO:0008380 [list] [network] RNA splicing  (191 genes)  NAS  
GO CC
GO:0010445 [list] [network] nuclear dicing body  (6 genes)  IDA  
GO:0005681 [list] [network] spliceosomal complex  (14 genes)  ISS  
GO:0016607 [list] [network] nuclear speck  (50 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001078447.1  NP_001190837.1  NP_001320063.1  NP_001328585.1  NP_001328586.1  NP_001328587.1  NP_194280.1  NP_974616.2 
BLAST NP_001078447.1  NP_001190837.1  NP_001320063.1  NP_001328585.1  NP_001328586.1  NP_001328587.1  NP_194280.1  NP_974616.2 
Orthologous [Ortholog page] RS31a (ath)  RS31 (ath)  RS41 (ath)  LOC4328133 (osa)  LOC4334964 (osa)  LOC7454468 (ppo)  LOC7464900 (ppo)  LOC7482121 (ppo)  LOC7492794 (ppo)  LOC7494037 (ppo)  LOC7497271 (ppo)  LOC11422261 (mtr)  LOC11445062 (mtr)  LOC25500953 (mtr)  LOC100781534 (gma)  LOC100796509 (gma)  LOC100797709 (gma)  LOC100797778 (gma)  LOC100801043 (gma)  LOC100815452 (gma)  LOC101246991 (sly)  LOC101258786 (sly)  LOC101263057 (sly)  LOC101264097 (sly)  LOC101266564 (sly)  LOC103834867 (bra)  LOC103857154 (bra)  LOC103863268 (bra)  LOC103866451 (bra)  LOC123050970 (tae)  LOC123094071 (tae)  LOC123099280 (tae)  LOC123106211 (tae)  LOC123131876 (tae)  LOC123135841 (tae)  LOC123143365 (tae)  LOC123186938 (tae)  LOC123401142 (hvu)  LOC123431480 (hvu)  LOC123450013 (hvu) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001078447.1)
nucl 10  (predict for NP_001190837.1)
nucl 10  (predict for NP_001320063.1)
nucl 10  (predict for NP_001328585.1)
nucl 10  (predict for NP_001328586.1)
nucl 10  (predict for NP_001328587.1)
nucl 10  (predict for NP_194280.1)
nucl 10  (predict for NP_974616.2)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_001078447.1)
other 9  (predict for NP_001190837.1)
scret 6  (predict for NP_001320063.1)
scret 6  (predict for NP_001328585.1)
scret 6  (predict for NP_001328586.1)
other 8,  chlo 3  (predict for NP_001328587.1)
other 9  (predict for NP_194280.1)
scret 6  (predict for NP_974616.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
Genes directly connected with RS40 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.2 BPC6 basic pentacysteine 6 [detail] 834259
7.0 RS41 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 835279
6.8 UNE16 Homeodomain-like superfamily protein [detail] 826998
5.2 AT1G75800 Pathogenesis-related thaumatin superfamily protein [detail] 843913
Coexpressed
gene list		 [Coexpressed gene list for RS40]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254073_at
254073_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254073_at
254073_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254073_at
254073_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828654      
Refseq ID (protein) NP_001078447.1 
NP_001190837.1 
NP_001320063.1 
NP_001328585.1 
NP_001328586.1 
NP_001328587.1 
NP_194280.1 
NP_974616.2 


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