functional annotation |
Function |
FtsJ-like methyltransferase family protein |
|
GO BP |
GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
|
(13 genes)
|
IBA
|
|
GO:0000466 [list] [network] maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
|
(15 genes)
|
IBA
|
|
GO:0031167 [list] [network] rRNA methylation
|
(30 genes)
|
IBA
|
|
GO:0032259 [list] [network] methylation
|
(371 genes)
|
ISS
|
|
|
GO CC |
|
GO MF |
GO:0008650 [list] [network] rRNA (uridine-2'-O-)-methyltransferase activity
|
(2 genes)
|
IBA
|
|
GO:0016435 [list] [network] rRNA (guanine) methyltransferase activity
|
(3 genes)
|
IBA
|
|
|
KEGG |
|
|
Protein |
NP_194303.2
|
BLAST |
NP_194303.2
|
Orthologous |
[Ortholog page]
LOC4339641 (osa)
LOC7456367 (ppo)
LOC11439257 (mtr)
LOC100255646 (vvi)
LOC100381782 (zma)
LOC100784758 (gma)
LOC100790741 (gma)
LOC101249125 (sly)
LOC101253343 (sly)
LOC101253649 (sly)
LOC103635342 (zma)
LOC103834857 (bra)
LOC103861588 (bra)
|
Subcellular localization wolf |
chlo 2,
E.R. 2,
nucl 1,
plas 1,
vacu 1,
chlo_mito 1,
nucl_plas 1
|
(predict for NP_194303.2)
|
|
Subcellular localization TargetP |
other 7,
mito 6
|
(predict for NP_194303.2)
|
|
Gene coexpression |
Network*for coexpressed genes |
KEGG* ID |
Title |
#genes |
Link to the KEGG* map (Multiple genes) |
ath03008 |
Ribosome biogenesis in eukaryotes |
5 |
|
Genes directly connected with AT4G25730 on the network
coex z* |
Locus |
Function* |
Coexpression detail |
Entrez Gene ID* |
18.4 |
AT4G16630 |
DEA(D/H)-box RNA helicase family protein |
[detail] |
827364 |
15.1 |
AT2G18220 |
Noc2p family |
[detail] |
816337 |
14.2 |
AT2G21440 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
[detail] |
816683 |
13.6 |
AT1G06720 |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
[detail] |
837182 |
13.5 |
AT3G58660 |
Ribosomal protein L1p/L10e family |
[detail] |
825035 |
12.7 |
EMB2777 |
Sas10/U3 ribonucleoprotein (Utp) family protein |
[detail] |
818967 |
11.7 |
AT1G77030 |
putative DEAD-box ATP-dependent RNA helicase 29 |
[detail] |
844039 |
10.6 |
NAF1 |
nuclear assembly factor 1 |
[detail] |
839468 |
10.3 |
AT1G50920 |
Nucleolar GTP-binding protein |
[detail] |
841514 |
9.4 |
AT1G13030 |
sphere organelles protein-like protein |
[detail] |
837860 |
9.1 |
EDA7 |
embryo sac development arrest 7 |
[detail] |
824866 |
6.9 |
MTA |
mRNAadenosine methylase |
[detail] |
826670 |
|
Coexpressed gene list |
[Coexpressed gene list for AT4G25730]
|
Gene expression |
All samples |
[Expression pattern for all samples]
|
AtGenExpress* (Development) |
254079_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress* (Stress) |
254079_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress* (Hormone) |
254079_at
X axis is samples (xls file), and Y axis is log-expression.
|