[←][→] ath   At4g27880 Gene
functional annotation
Function   Protein with RING/U-box and TRAF-like domain    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (230 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (434 genes)  IDA IEA  
GO CC
GO:0005886 [list] [network] plasma membrane  (2529 genes)  IPI  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IPI ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IPI  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (78 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (155 genes)
Protein NP_194517.1 
BLAST NP_194517.1 
Orthologous [Ortholog page] AT2G41980 (ath)  SINAT2 (ath)  AT3G61790 (ath)  AT5G53360 (ath)  LOC4327774 (osa)  LOC4329066 (osa)  LOC4338181 (osa)  LOC7455750 (ppo)  LOC7457400 (ppo)  LOC7463600 (ppo)  LOC7475187 (ppo)  LOC7479519 (ppo)  LOC7484028 (ppo)  LOC7486772 (ppo)  LOC7496400 (ppo)  LOC11418493 (mtr)  LOC11423170 (mtr)  LOC11446457 (mtr)  LOC25483549 (mtr)  LOC25499735 (mtr)  LOC25500674 (mtr)  LOC100500061 (gma)  LOC100782764 (gma)  LOC100792687 (gma)  LOC100810573 (gma)  LOC100813966 (gma)  LOC101246723 (sly)  LOC101253831 (sly)  SlSINA5 (sly)  SINA4 (sly)  SlSINA1 (sly)  LOC101264159 (sly)  LOC103830135 (bra)  LOC103830327 (bra)  LOC103834788 (bra)  LOC103841701 (bra)  LOC103858006 (bra)  LOC103862812 (bra)  LOC103863005 (bra)  LOC103865920 (bra)  LOC103867677 (bra)  LOC123060825 (tae)  LOC123069400 (tae)  LOC123077898 (tae)  LOC123147734 (tae)  LOC123157150 (tae)  LOC123165457 (tae)  LOC123180859 (tae)  LOC123407757 (hvu)  LOC123428647 (hvu)  LOC123443282 (hvu) 
Subcellular
localization
wolf
nucl 6,  chlo 1,  cyto 1  (predict for NP_194517.1)
Subcellular
localization
TargetP
other 9  (predict for NP_194517.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT4G27880 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.7 BPM2 BTB-POZ and MATH domain 2 [detail] 819793
7.5 AT5G05100 Single-stranded nucleic acid binding R3H protein [detail] 830392
6.9 LRB1 BTB/POZ/Kelch-associated protein [detail] 819234
6.7 NDL1 N-MYC downregulated-like 1 [detail] 835777
6.5 BPC1 basic pentacysteine1 [detail] 814724
6.4 AT3G06270 Protein phosphatase 2C family protein [detail] 819801
6.3 AT3G09760 RING/U-box superfamily protein [detail] 820134
6.0 BAM4 beta-amylase 4 [detail] 835664
5.4 AT2G30350 Excinuclease ABC, C subunit, N-terminal [detail] 817585
Coexpressed
gene list		 [Coexpressed gene list for AT4G27880]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253838_at
253838_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253838_at
253838_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253838_at
253838_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828901      
Refseq ID (protein) NP_194517.1 


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