[][] ath   AT4G28450 Gene
functional annotation
Function   WD repeat and SOF domain-containing protein 1
GO BP
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (27 genes)  IBA  
GO CC
GO:0032040 [list] [network] small-subunit processome  (41 genes)  IBA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (130 genes)  IBA IPI  
GO:0005730 [list] [network] nucleolus  (477 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_567810.5 
BLAST NP_567810.5 
Orthologous [Ortholog page] LOC4326362 (osa)LOC11414546 (mtr)LOC100260774 (vvi)LOC100273845 (zma)LOC100812671 (gma)LOC101251902 (sly)LOC103861832 (bra)
Subcellular
localization
wolf
nucl 6,  chlo 2,  cyto 1,  mito 1,  cysk 1  (predict for NP_567810.5)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for NP_567810.5)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
Genes directly connected with AT4G28450 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
11.9 AT5G15550 Transducin/WD40 repeat-like superfamily protein [detail] 831408
11.5 AT5G11240 transducin family protein / WD-40 repeat family protein [detail] 830994
11.4 AT5G22100 RNA cyclase family protein [detail] 832271
10.2 AT3G13940 DNA binding / DNA-directed RNA polymerase [detail] 820607
9.5 AT2G41670 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 818765
9.4 AT2G44510 CDK inhibitor P21 binding protein [detail] 819058
9.4 RH1 RNA helicase 1 [detail] 827266
8.8 RECA2 recA DNA recombination family protein [detail] 816468
8.7 AT4G31790 Tetrapyrrole (Corrin/Porphyrin) Methylase [detail] 829307
8.7 RID3 Transducin/WD40 repeat-like superfamily protein [detail] 824079
6.1 AT2G23890 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [detail] 816921
Coexpressed
gene list
[Coexpressed gene list for AT4G28450]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253777_at
253777_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253777_at
253777_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
253777_at
253777_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 828962    
Refseq ID (protein) NP_567810.5 


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