[←][→] ath   At4g28660 Gene
functional annotation
Function   photosystem II reaction center PSB28 protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0065003 [list] [network] protein-containing complex assembly  (393 genes)  IEA  
GO:0006979 [list] [network] response to oxidative stress  (545 genes)  IEA  
GO:0008610 [list] [network] lipid biosynthetic process  (657 genes)  IEA  
GO:0044255 [list] [network] cellular lipid metabolic process  (822 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (1981 genes)  IEA  
GO:0010035 [list] [network] response to inorganic substance  (2100 genes)  IEA  
GO CC
GO:0009654 [list] [network] photosystem II oxygen evolving complex  (19 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
KEGG ath00195 [list] [network] Photosynthesis (77 genes)
Protein NP_001190860.1  NP_567814.1 
BLAST NP_001190860.1  NP_567814.1 
Orthologous [Ortholog page] LOC4326537 (osa)  LOC7459542 (ppo)  LOC25484200 (mtr)  LOC100306491 (gma)  LOC100780777 (gma)  LOC101245880 (sly)  LOC103854241 (bra)  LOC103861848 (bra)  LOC123062562 (tae)  LOC123071383 (tae)  LOC123079721 (tae)  LOC123087755 (tae)  LOC123114179 (tae)  LOC123123666 (tae)  LOC123394947 (hvu)  LOC123440539 (hvu) 
Subcellular
localization
wolf
chlo 9  (predict for NP_001190860.1)
chlo 9,  nucl 1,  mito 1  (predict for NP_567814.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001190860.1)
chlo 8  (predict for NP_567814.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 3
ath00710 Carbon fixation in photosynthetic organisms 2
ath01230 Biosynthesis of amino acids 2
ath00195 Photosynthesis 2
Genes directly connected with PSB28 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.5 AT5G08050 wiskott-aldrich syndrome family protein, putative (DUF1118) [detail] 830699
8.8 SEP1 stress enhanced protein 1 [detail] 829567
8.7 G4 UbiA prenyltransferase family protein [detail] 824345
8.0 EMB3119 Ribose 5-phosphate isomerase, type A protein [detail] 819639
6.7 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast [detail] 828595
6.3 AT4G34730 ribosome-binding factor A family protein [detail] 829625
Coexpressed
gene list		 [Coexpressed gene list for PSB28]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253790_at
253790_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253790_at
253790_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253790_at
253790_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828984      
Refseq ID (protein) NP_001190860.1 
NP_567814.1 


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