[←][→] ath   AT4G28660 Gene
functional annotation
Function   photosystem II reaction center PSB28 protein  
GO BP
GO:0015979 [list] [network] photosynthesis  (206 genes)  IEA  
GO CC
GO:0009654 [list] [network] photosystem II oxygen evolving complex  (21 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (373 genes)  IDA  
GO:0009579 [list] [network] thylakoid  (543 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  HDA IDA ISM  
GO MF
KEGG ath00195 [list] [network] Photosynthesis (76 genes)
Protein NP_001190860.1  NP_567814.1 
BLAST NP_001190860.1  NP_567814.1 
Orthologous [Ortholog page] LOC4326537 (osa)  LOC7459542 (ppo)  LOC25484200 (mtr)  LOC100260011 (vvi)  LOC100284876 (zma)  LOC100306491 (gma)  LOC100780777 (gma)  LOC101245880 (sly)  LOC103636309 (zma)  LOC103650780 (zma)  LOC103650783 (zma)  LOC103854241 (bra)  LOC103861848 (bra)  LOC109945128 (zma) 
Subcellular
localization
wolf
chlo 9  (predict for NP_001190860.1)
chlo 9,  nucl 1,  mito 1  (predict for NP_567814.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001190860.1)
chlo 8  (predict for NP_567814.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath00710 Carbon fixation in photosynthetic organisms 4
ath01200 Carbon metabolism 4
ath00030 Pentose phosphate pathway 2
ath01230 Biosynthesis of amino acids 2
Genes directly connected with PSB28 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.4 AT5G08050 wiskott-aldrich syndrome family protein, putative (DUF1118) [detail] 830699
8.2 PRPL35 Ribosomal protein L35 [detail] 816943
7.9 NPQ4 Chlorophyll A-B binding family protein [detail] 841033
7.8 CCB1 cofactor assembly of complex C [detail] 822283
7.7 EMB3119 Ribose 5-phosphate isomerase, type A protein [detail] 819639
6.8 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast [detail] 828595
Coexpressed
gene list		 [Coexpressed gene list for PSB28]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253790_at
253790_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253790_at
253790_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253790_at
253790_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828984      
Refseq ID (protein) NP_001190860.1 
NP_567814.1 


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