[←][→] ath   AT4G29820 Gene
functional annotation
Function   homolog of CFIM-25  
GO BP
GO:0006378 [list] [network] mRNA polyadenylation  (20 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IBA  
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (14 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IBA  
GO:0016787 [list] [network] hydrolase activity  (3024 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03015 [list] [network] mRNA surveillance pathway (115 genes)
Protein NP_567835.1 
BLAST NP_567835.1 
Orthologous [Ortholog page] LOC4345502 (osa)  LOC7484650 (ppo)  LOC25486436 (mtr)  LOC100250770 (vvi)  LOC100280946 (zma)  LOC100791216 (gma)  LOC101261536 (sly)  LOC103853276 (bra) 
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  mito 1,  cysk 1,  golg 1,  chlo_mito 1,  cysk_nucl 1  (predict for NP_567835.1)
Subcellular
localization
TargetP
other 9  (predict for NP_567835.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
Genes directly connected with CFIM-25 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.1 VIP1 VIRE2-interacting protein 1 [detail] 840957
5.8 RHB1A RING-H2 finger B1A [detail] 828093
5.6 AT5G51170 U6 snRNA phosphodiesterase-like protein [detail] 835191
5.1 AT1G20890 caveolin-1 protein [detail] 838682
5.1 AT4G19390 Uncharacterized protein family (UPF0114) [detail] 827680
Coexpressed
gene list		 [Coexpressed gene list for CFIM-25]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253672_at
253672_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253672_at
253672_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253672_at
253672_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829104      
Refseq ID (protein) NP_567835.1 


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