ATTED-II : GeneID search result

[←][→] ath AT4G31670 Gene

functional annotation

Function

ubiquitin-specific protease 18

GO BP

GO:0016579 [list] [network] protein deubiquitination	(48 genes)	IBA
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(436 genes)	IEA

GO CC

GO:0016021 [list] [network] integral component of membrane	(4803 genes)	IEA
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM

GO MF

GO:0004843 [list] [network] thiol-dependent ubiquitin-specific protease activity	(42 genes)	IBA
GO:0004197 [list] [network] cysteine-type endopeptidase activity	(66 genes)	IBA
GO:0046872 [list] [network] metal ion binding	(3180 genes)	IEA

KEGG

Protein

NP_194895.1

BLAST

NP_194895.1

Orthologous

[Ortholog page] UBP19 (ath) LOC4341708 (osa) LOC7458720 (ppo) LOC7459906 (ppo) LOC25481970 (mtr) LOC100246913 (vvi) LOC100799652 (gma) LOC100810577 (gma) LOC100817913 (gma) LOC100820594 (gma) LOC101244268 (sly) LOC101247350 (sly) LOC103629692 (zma) LOC103842238 (bra) LOC103851629 (bra) LOC103864566 (bra)

Subcellular
localization
wolf

extr 3, chlo 1, nucl 1, cyto 1, vacu 1, cyto_nucl 1

(predict for NP_194895.1)

Subcellular
localization
TargetP

scret 9, other 4

(predict for NP_194895.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with UBP18 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.9	AT3G49490	hypothetical protein	[detail]	824111
6.1	AT1G52320	kinesin-like protein	[detail]	841662
5.5	NAR1	ferredoxin hydrogenase	[detail]	827338

Coexpressed
gene list

[Coexpressed gene list for UBP18]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

253542_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

253542_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

253542_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	829295
Refseq ID (protein)	NP_194895.1

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