ATTED-II : GeneID search result

[←][→] ath AT4G34110 Gene

functional annotation

Function

poly(A) binding protein 2

GO BP

GO:0060211 [list] [network] regulation of nuclear-transcribed mRNA poly(A) tail shortening	(3 genes)	IDA
GO:1900151 [list] [network] regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	(3 genes)	IDA
GO:0006446 [list] [network] regulation of translational initiation	(7 genes)	IDA
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	(19 genes)	IEA
GO:0016032 [list] [network] viral process	(63 genes)	IEA
GO:0006413 [list] [network] translational initiation	(95 genes)	ISS

GO CC

GO:1990904 [list] [network] ribonucleoprotein complex	(690 genes)	IBA
GO:0005829 [list] [network] cytosol	(3506 genes)	IBA IDA
GO:0005886 [list] [network] plasma membrane	(3771 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5095 genes)	ISM
GO:0005634 [list] [network] nucleus	(10793 genes)	IBA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	IBA

GO MF

GO:0003730 [list] [network] mRNA 3'-UTR binding	(14 genes)	IBA
GO:0008143 [list] [network] poly(A) binding	(19 genes)	IBA
GO:0008266 [list] [network] poly(U) RNA binding	(28 genes)	IBA
GO:0003743 [list] [network] translation initiation factor activity	(95 genes)	ISS
GO:0003729 [list] [network] mRNA binding	(1026 genes)	IDA
GO:0003723 [list] [network] RNA binding	(1790 genes)	IBA
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

ath03013 [list] [network] RNA transport (171 genes)

ath03015 [list] [network] mRNA surveillance pathway (115 genes)

ath03018 [list] [network] RNA degradation (113 genes)

Protein

NP_195137.5

BLAST

NP_195137.5

Orthologous

[Ortholog page] PAB4 (ath) PAB3 (ath) PAB8 (ath) PAB5 (ath) LOC4336331 (osa) LOC4341408 (osa) LOC4345242 (osa) LOC4346409 (osa) LOC7467793 (ppo) LOC7490046 (ppo) LOC7492048 (ppo) LOC7492495 (ppo) LOC11419187 (mtr) LOC11429679 (mtr) LOC11445084 (mtr) LOC25485028 (mtr) LOC25496270 (mtr) LOC100241923 (vvi) LOC100255846 (vvi) LOC100262903 (vvi) LOC100263065 (vvi) LOC100285420 (zma) LOC100381531 (zma) LOC100383542 (zma) LOC100502035 (zma) LOC100778879 (gma) LOC100780329 (gma) LOC100783163 (gma) LOC100784442 (gma) LOC100798998 (gma) LOC100808877 (gma) LOC100811385 (gma) LOC100813735 (gma) LOC101258105 (sly) LOC101261596 (sly) LOC101264108 (sly) LOC103641822 (zma) LOC103830833 (bra) LOC103831686 (bra) LOC103834441 (bra) LOC103835691 (bra) LOC103842244 (bra) LOC103842418 (bra) LOC103844362 (bra) LOC103860422 (bra) LOC103871402 (bra)

Subcellular
localization
wolf

nucl 4, cyto_nucl 3, pero 2, cyto 1, chlo 1, mito 1, E.R. 1, chlo_mito 1

(predict for NP_195137.5)

Subcellular
localization
TargetP

other 4, mito 4

(predict for NP_195137.5)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	RNA transport	6
ath03010	Ribosome	5
ath00620	Pyruvate metabolism	3
ath01200	Carbon metabolism	3
ath00010	Glycolysis / Gluconeogenesis	2

Genes directly connected with PAB2 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.9	NADP-ME4	NADP-malic enzyme 4	[detail]	844314
6.8	PAB4	poly(A) binding protein 4	[detail]	816867
6.5	eIFiso4G1	MIF4G domain-containing protein / MA3 domain-containing protein	[detail]	835897

Coexpressed
gene list

[Coexpressed gene list for PAB2]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

253280_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

253280_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

253280_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	829557
Refseq ID (protein)	NP_195137.5

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