[←][→] ath   AT4G36020 Gene
functional annotation
Function   cold shock domain protein 1  
GO BP
GO:0010501 [list] [network] RNA secondary structure unwinding  (2 genes)  IDA  
GO:0032508 [list] [network] DNA duplex unwinding  (29 genes)  IDA  
GO:0009631 [list] [network] cold acclimation  (59 genes)  IGI  
GO:0009414 [list] [network] response to water deprivation  (361 genes)  IEP  
GO:0009409 [list] [network] response to cold  (411 genes)  IEP IGI  
GO:0009651 [list] [network] response to salt stress  (485 genes)  IEP  
GO CC
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA  
GO MF
GO:0003697 [list] [network] single-stranded DNA binding  (75 genes)  IDA  
GO:0003690 [list] [network] double-stranded DNA binding  (343 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IDA  
KEGG
Protein NP_001320149.1  NP_001329650.1  NP_195326.1 
BLAST NP_001320149.1  NP_001329650.1  NP_195326.1 
Orthologous [Ortholog page] CSP3 (ath)  LOC103845908 (bra)  LOC103871381 (bra) 
Subcellular
localization
wolf
nucl 4,  chlo 2,  nucl_plas 2,  cyto 1,  mito 1  (predict for NP_001320149.1)
nucl 6,  chlo 1,  cyto 1,  mito 1,  chlo_mito 1  (predict for NP_001329650.1)
nucl 4,  chlo 2,  nucl_plas 2,  cyto 1,  mito 1  (predict for NP_195326.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001320149.1)
other 8  (predict for NP_001329650.1)
other 8  (predict for NP_195326.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03013 RNA transport 4
ath03015 mRNA surveillance pathway 4
Genes directly connected with CSDP1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.1 CSP3 cold shock domain protein 3 [detail] 816297
7.8 AT4G38710 glycine-rich protein [detail] 830027
7.4 eIFiso4G2 MIF4G domain-containing protein / MA3 domain-containing protein [detail] 816939
7.1 ASE2 GLN phosphoribosyl pyrophosphate amidotransferase 2 [detail] 829626
7.1 AT3G15010 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 820730
Coexpressed
gene list		 [Coexpressed gene list for CSDP1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253129_at
253129_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253129_at
253129_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253129_at
253129_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829758      
Refseq ID (protein) NP_001320149.1 
NP_001329650.1 
NP_195326.1 


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