[][] ath   At4g37650 Gene
functional annotation
Function   GRAS family transcription factor Plant GARDENPlant GARDEN JBrowse
GO BP
GO:0009660 [list] [network] amyloplast organization  (5 genes)  IMP  
GO:0045930 [list] [network] negative regulation of mitotic cell cycle  (8 genes)  IMP  
GO:0008356 [list] [network] asymmetric cell division  (24 genes)  IMP  
GO:0009959 [list] [network] negative gravitropism  (25 genes)  IMP  
GO:0032350 [list] [network] regulation of hormone metabolic process  (28 genes)  NAS  
GO:0009956 [list] [network] radial pattern formation  (31 genes)  IMP  
GO:0009958 [list] [network] positive gravitropism  (39 genes)  IMP  
GO:0055072 [list] [network] iron ion homeostasis  (50 genes)  IMP  
GO:0048366 [list] [network] leaf development  (465 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (708 genes)  IPI  
GO:0043565 [list] [network] sequence-specific DNA binding  (890 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS TAS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_195480.1 
BLAST NP_195480.1 
Orthologous [Ortholog page] LOC4343753 (osa)LOC7491733 (ppo)LOC9269685 (osa)LOC11409306 (mtr)LOC11434453 (mtr)LOC18103745 (ppo)LOC18106876 (ppo)LOC25487907 (mtr)LOC100778524 (gma)LOC100797072 (gma)LOC100814082 (gma)LOC100818806 (gma)LOC100820459 (gma)LOC101249840 (sly)LOC101262675 (sly)LOC103835041 (bra)LOC103858567 (bra)LOC103862567 (bra)LOC112324651 (ppo)LOC123044387 (tae)LOC123188153 (tae)LOC123425503 (hvu)
Subcellular
localization
wolf
chlo 5,  nucl 3,  mito 1,  cyto_nucl 1,  nucl_plas 1  (predict for NP_195480.1)
Subcellular
localization
TargetP
other 5,  mito 3  (predict for NP_195480.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
Genes directly connected with SHR on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.1 AT5G01890 Leucine-rich receptor-like protein kinase family protein [detail] 831677
5.9 PIN1 Auxin efflux carrier family protein [detail] 843693
5.9 BRL2 BRI1-like 2 [detail] 814726
5.6 PID2 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [detail] 817211
Coexpressed
gene list
[Coexpressed gene list for SHR]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253056_at
253056_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253056_at
253056_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
253056_at
253056_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 829919    
Refseq ID (protein) NP_195480.1 


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