[←][→] ath   AT4G37930 Gene
functional annotation
Function   serine transhydroxymethyltransferase 1  
GO BP
GO:0019464 [list] [network] glycine decarboxylation via glycine cleavage system  (6 genes)  IMP  
GO:0006565 [list] [network] L-serine catabolic process  (7 genes)  IBA  
GO:0019264 [list] [network] glycine biosynthetic process from serine  (7 genes)  IBA  
GO:1904482 [list] [network] cellular response to tetrahydrofolate  (7 genes)  IBA  
GO:0046655 [list] [network] folic acid metabolic process  (13 genes)  IBA  
GO:0035999 [list] [network] tetrahydrofolate interconversion  (14 genes)  IEA  
GO:0006544 [list] [network] glycine metabolic process  (17 genes)  IBA IDA  
GO:0006563 [list] [network] L-serine metabolic process  (27 genes)  IDA  
GO:0006730 [list] [network] one-carbon metabolic process  (29 genes)  IBA  
GO:0046653 [list] [network] tetrahydrofolate metabolic process  (29 genes)  IBA  
GO:0009853 [list] [network] photorespiration  (54 genes)  IMP  
GO:0009626 [list] [network] plant-type hypersensitive response  (73 genes)  TAS  
GO:0007623 [list] [network] circadian rhythm  (111 genes)  IEP  
GO:0046686 [list] [network] response to cadmium ion  (346 genes)  IEP  
GO:0009409 [list] [network] response to cold  (411 genes)  IEP  
GO:0009416 [list] [network] response to light stimulus  (700 genes)  IEP  
GO CC
GO:0010319 [list] [network] stromule  (33 genes)  IDA  
GO:0005759 [list] [network] mitochondrial matrix  (143 genes)  ISS  
GO:0022626 [list] [network] cytosolic ribosome  (317 genes)  IDA  
GO:0048046 [list] [network] apoplast  (443 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (474 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA IDA  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA  
GO MF
GO:0004372 [list] [network] glycine hydroxymethyltransferase activity  (7 genes)  IBA IDA TAS  
GO:0070905 [list] [network] serine binding  (7 genes)  IBA  
GO:0016597 [list] [network] amino acid binding  (26 genes)  IBA  
GO:0008266 [list] [network] poly(U) RNA binding  (28 genes)  IDA  
GO:0050897 [list] [network] cobalt ion binding  (51 genes)  IBA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (84 genes)  IBA  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00460 [list] [network] Cyanoamino acid metabolism (69 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00670 [list] [network] One carbon pool by folate (20 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
ath01230 [list] [network] Biosynthesis of amino acids (251 genes)
Protein NP_195506.1 
BLAST NP_195506.1 
Orthologous [Ortholog page] SHM2 (ath)  LOC4334048 (osa)  LOC7461838 (ppo)  LOC7497767 (ppo)  LOC11405458 (mtr)  LOC11429401 (mtr)  LOC100243424 (vvi)  LOC100245411 (vvi)  LOC100261289 (vvi)  LOC100499634 (gma)  LOC100499635 (gma)  LOC100812952 (gma)  LOC100816213 (gma)  LOC101254439 (sly)  LOC101264818 (sly)  LOC103830855 (bra)  LOC103831657 (bra)  LOC103835059 (bra)  LOC103856643 (bra)  LOC113664104 (zma) 
Subcellular
localization
wolf
mito 9,  chlo 1  (predict for NP_195506.1)
Subcellular
localization
TargetP
mito 6,  chlo 3  (predict for NP_195506.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 4
ath00630 Glyoxylate and dicarboxylate metabolism 4
ath00910 Nitrogen metabolism 3
ath00710 Carbon fixation in photosynthetic organisms 3
ath01230 Biosynthesis of amino acids 2
Genes directly connected with SHM1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
13.1 CRB chloroplast RNA binding protein [detail] 837455
10.5 AT3G48420 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [detail] 824000
10.4 GLU1 glutamate synthase 1 [detail] 830292
9.7 GS2 glutamine synthetase 2 [detail] 833535
8.3 PGR5-LIKE A PGR5-LIKE A [detail] 828388
8.1 CYP97A3 cytochrome P450, family 97, subfamily A, polypeptide 3 [detail] 840067
7.8 KEA1 K+ efflux antiporter 1 [detail] 837332
Coexpressed
gene list		 [Coexpressed gene list for SHM1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253009_at
253009_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253009_at
253009_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253009_at
253009_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829949      
Refseq ID (protein) NP_195506.1 


The preparation time of this page was 0.3 [sec].