[←][→] ath   At4g37930 Gene
functional annotation
Function   serine transhydroxymethyltransferase 1      
GO BP
GO:0019464 [list] [network] glycine decarboxylation via glycine cleavage system  (2 genes)  IMP  
GO:0006544 [list] [network] glycine metabolic process  (6 genes)  IDA  
GO:0006563 [list] [network] L-serine metabolic process  (15 genes)  IDA  
GO:0009853 [list] [network] photorespiration  (41 genes)  IMP  
GO:0009626 [list] [network] plant-type hypersensitive response  (46 genes)  TAS  
GO:0007623 [list] [network] circadian rhythm  (123 genes)  IEP  
GO:0009409 [list] [network] response to cold  (472 genes)  IEP  
GO:0009416 [list] [network] response to light stimulus  (1981 genes)  IEP  
GO CC
GO:0010319 [list] [network] stromule  (37 genes)  IDA  
GO:0005759 [list] [network] mitochondrial matrix  (43 genes)  ISS  
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0048046 [list] [network] apoplast  (305 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA IDA  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  HDA IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  HDA  
GO MF
GO:0004372 [list] [network] glycine hydroxymethyltransferase activity  (3 genes)  IDA TAS  
GO:0008266 [list] [network] poly(U) RNA binding  (19 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00460 [list] [network] Cyanoamino acid metabolism (71 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00670 [list] [network] One carbon pool by folate (21 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
ath01230 [list] [network] Biosynthesis of amino acids (244 genes)
ath01240 [list] [network] Biosynthesis of cofactors (236 genes)
Protein NP_195506.1 
BLAST NP_195506.1 
Orthologous [Ortholog page] SHM2 (ath)  LOC4334048 (osa)  LOC7455512 (ppo)  LOC7461838 (ppo)  LOC7497767 (ppo)  LOC11405458 (mtr)  LOC11429401 (mtr)  LOC100499634 (gma)  LOC100499635 (gma)  LOC100779843 (gma)  LOC100812952 (gma)  LOC100816213 (gma)  LOC101254439 (sly)  LOC101264818 (sly)  LOC103830855 (bra)  LOC103831657 (bra)  LOC103835059 (bra)  LOC103856643 (bra)  LOC123086926 (tae)  LOC123091051 (tae)  LOC123096060 (tae)  LOC123447720 (hvu) 
Subcellular
localization
wolf
mito 9,  chlo 1  (predict for NP_195506.1)
Subcellular
localization
TargetP
mito 6,  chlo 3  (predict for NP_195506.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 7
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath00710 Carbon fixation in photosynthetic organisms 4
ath00195 Photosynthesis 4
ath00260 Glycine, serine and threonine metabolism 4
Genes directly connected with SHM1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
14.0 CRB chloroplast RNA binding protein [detail] 837455
10.3 PETC photosynthetic electron transfer C [detail] 827996
9.8 AT3G48420 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [detail] 824000
9.6 PGR5-LIKE A PGR5-LIKE A [detail] 828388
9.6 GGT1 glutamate:glyoxylate aminotransferase [detail] 838940
9.4 GLU1 glutamate synthase 1 [detail] 830292
9.1 GS2 glutamine synthetase 2 [detail] 833535
8.9 GLDP1 glycine decarboxylase P-protein 1 [detail] 829438
8.2 CYP97A3 cytochrome P450, family 97, subfamily A, polypeptide 3 [detail] 840067
8.1 KEA1 K+ efflux antiporter 1 [detail] 837332
Coexpressed
gene list		 [Coexpressed gene list for SHM1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253009_at
253009_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253009_at
253009_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253009_at
253009_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829949      
Refseq ID (protein) NP_195506.1 


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