ATTED-II : GeneID search result

[←][→] ath At4g39260 Gene

functional annotation

Function

cold, circadian rhythm, and RNA binding 1

GO BP

GO:0006858 [list] [network] extracellular transport	(4 genes)	IDA
GO:1990428 [list] [network] miRNA transport	(6 genes)	IDA
GO:0000380 [list] [network] alternative mRNA splicing, via spliceosome	(10 genes)	IMP
GO:0050688 [list] [network] regulation of defense response to virus	(16 genes)	IDA
GO:0050658 [list] [network] RNA transport	(26 genes)	IDA
GO:0010043 [list] [network] response to zinc ion	(46 genes)	IEP
GO:0045087 [list] [network] innate immune response	(161 genes)	IDA
GO:0009409 [list] [network] response to cold	(472 genes)	IEP

GO CC

GO:0005615 [list] [network] extracellular space	(45 genes)	IDA
GO:0005777 [list] [network] peroxisome	(311 genes)	HDA
GO:0005730 [list] [network] nucleolus	(387 genes)	HDA
GO:0009505 [list] [network] plant-type cell wall	(498 genes)	HDA
GO:0009506 [list] [network] plasmodesma	(871 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1182 genes)	HDA
GO:0005886 [list] [network] plasma membrane	(2529 genes)	HDA
GO:0005829 [list] [network] cytosol	(2559 genes)	HDA RCA
GO:0005739 [list] [network] mitochondrion	(4228 genes)	ISM
GO:0005634 [list] [network] nucleus	(10305 genes)	ISM

GO MF

GO:0035197 [list] [network] siRNA binding	(9 genes)	IDA
GO:0035198 [list] [network] miRNA binding	(11 genes)	IDA
GO:0003727 [list] [network] single-stranded RNA binding	(55 genes)	IDA
GO:0003729 [list] [network] mRNA binding	(1535 genes)	HDA IDA

KEGG

Protein

NP_195637.1 NP_849523.1 NP_849524.1 NP_849525.1

BLAST

NP_195637.1 NP_849523.1 NP_849524.1 NP_849525.1

Orthologous

[Ortholog page] LOC543231 (tae) GRP (gma) GRP7 (ath) LOC4333690 (osa) LOC4352868 (osa) LOC7461222 (ppo) LOC11413934 (mtr) LOC11413936 (mtr) LOC11420057 (mtr) LOC18102138 (ppo) LOC100037561 (tae) LOC100305467 (gma) LOC100777821 (gma) LOC100796543 (gma) LOC100796704 (gma) LOC100806292 (gma) LOC101262262 (sly) GRP1 (sly) LOC101266771 (sly) LOC103835130 (bra) LOC103835157 (bra) LOC103842502 (bra) LOC103846048 (bra) LOC103864290 (bra) LOC112998378 (gma) LOC123087309 (tae) LOC123095660 (tae) LOC123102010 (tae) LOC123130667 (tae) LOC123134221 (tae) LOC123141513 (tae) LOC123400027 (hvu) LOC123403078 (hvu) LOC123447032 (hvu)

Subcellular
localization
wolf

nucl 6, cyto 3, cysk_nucl 3, nucl_plas 3	(predict for NP_195637.1)
nucl 4, cyto 2, mito 2, cysk_nucl 2, nucl_plas 2	(predict for NP_849523.1)
nucl 4, cyto 3, chlo 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_849524.1)
nucl 5, cyto 2, mito 1, chlo 1, extr 1, cyto_mito 1, mito_plas 1	(predict for NP_849525.1)

Subcellular
localization
TargetP

other 7	(predict for NP_195637.1)
other 7	(predict for NP_849523.1)
other 6	(predict for NP_849524.1)
other 6	(predict for NP_849525.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with CCR1 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
14.4	GRP7	cold, circadian rhythm, and rna binding 2	[detail]	816705
8.5	GR-RBP2	glycine-rich RNA-binding protein 2	[detail]	827019
6.7	GRP2B	glycine-rich protein 2B	[detail]	816641
5.1	CIPK4	CBL-interacting protein kinase 4	[detail]	827106

Coexpressed
gene list

[Coexpressed gene list for CCR1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

252885_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

252885_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

252885_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	830082
Refseq ID (protein)	NP_195637.1
	NP_849523.1
	NP_849524.1
	NP_849525.1

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