[←][→] ath   At4g39620 Gene
functional annotation
Function   Tetratricopeptide repeat (TPR)-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009793 [list] [network] embryo development ending in seed dormancy  (697 genes)  IMP NAS  
GO CC
GO:0009507 [list] [network] chloroplast  (5004 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IEA  
KEGG
Protein NP_001190970.1  NP_195672.1 
BLAST NP_001190970.1  NP_195672.1 
Orthologous [Ortholog page] LOC4330740 (osa)  LOC7477117 (ppo)  LOC11427444 (mtr)  LOC100795589 (gma)  LOC100808981 (gma)  LOC101262511 (sly)  LOC103850678 (bra)  LOC123128355 (tae)  LOC123138207 (tae)  LOC123145463 (tae)  LOC123403739 (hvu) 
Subcellular
localization
wolf
chlo 5,  cyto_nucl 2,  nucl 1,  cyto 1,  mito 1,  cysk 1  (predict for NP_001190970.1)
nucl 3,  cyto_nucl 3,  cyto 2,  chlo 2,  cysk 1,  chlo_mito 1  (predict for NP_195672.1)
Subcellular
localization
TargetP
chlo 7,  other 3  (predict for NP_001190970.1)
chlo 7,  other 3  (predict for NP_195672.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with EMB2453 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.6 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 825073
9.6 EMB1865 CRS1 / YhbY (CRM) domain-containing protein [detail] 821368
9.2 MURE ALBINO OR PALE-GREEN 13 [detail] 842672
8.7 EMB2279 pentatricopeptide (PPR) repeat-containing protein [detail] 839941
8.4 emb1417 Pentatricopeptide repeat (PPR) superfamily protein [detail] 827867
7.6 HY2 phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) [detail] 820069
6.4 AT4G17540 dynamin [detail] 827469
5.9 RECA3 RECA homolog 3 [detail] 820177
Coexpressed
gene list		 [Coexpressed gene list for EMB2453]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252904_at
252904_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252904_at
252904_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252904_at
252904_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830116      
Refseq ID (protein) NP_001190970.1 
NP_195672.1 


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