[←][→] ath   At4g39780 Gene
functional annotation
Function   Integrase-type DNA-binding superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (1981 genes)  IEA  
GO:0006952 [list] [network] defense response  (2370 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IC ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (708 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1277 genes)  TAS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_195688.1 
BLAST NP_195688.1 
Orthologous [Ortholog page] DREB3 (sly)  DREB3 (gma)  LOC778402 (tae)  LOC778412 (tae)  AT2G22200 (ath)  AT5G65130 (ath)  AT1G22190 (ath)  RAP2.4 (ath)  LOC4330752 (osa)  LOC4331910 (osa)  LOC4340525 (osa)  LOC7456918 (ppo)  LOC7468904 (ppo)  LOC7471518 (ppo)  LOC7495144 (ppo)  LOC11437084 (mtr)  LOC25489428 (mtr)  LOC25501933 (mtr)  LOC100781774 (gma)  LOC100797648 (gma)  LOC100800478 (gma)  LOC100802961 (gma)  LOC100815162 (gma)  LOC100818839 (gma)  ERF-H11 (sly)  ERF-H10 (sly)  LOC103830541 (bra)  LOC103832233 (bra)  LOC103835096 (bra)  LOC103852206 (bra)  LOC103853108 (bra)  LOC103855279 (bra)  LOC103862614 (bra)  LOC103864333 (bra)  LOC103869071 (bra)  LOC103873940 (bra)  LOC106796800 (gma)  LOC123095153 (tae)  LOC123128343 (tae)  LOC123138190 (tae)  LOC123145449 (tae)  LOC123150946 (tae)  LOC123159838 (tae)  LOC123166284 (tae)  LOC123402980 (hvu)  LOC123412187 (hvu)  LOC123446962 (hvu) 
Subcellular
localization
wolf
nucl 8,  cyto_nucl 4,  chlo 1,  vacu 1  (predict for NP_195688.1)
Subcellular
localization
TargetP
other 9  (predict for NP_195688.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 5
ath00270 Cysteine and methionine metabolism 2
Genes directly connected with AT4G39780 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.3 AT3G60690 SAUR-like auxin-responsive protein family [detail] 825240
5.1 SERAT2;1 serine acetyltransferase 2;1 [detail] 842043
4.9 SWEET2 Nodulin MtN3 family protein [detail] 820705
4.7 AT2G22200 Integrase-type DNA-binding superfamily protein [detail] 816754
4.2 AT5G47050 SBP (S-ribonuclease binding protein) family protein [detail] 834751
Coexpressed
gene list		 [Coexpressed gene list for AT4G39780]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252859_at
252859_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252859_at
252859_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252859_at
252859_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 830136      
Refseq ID (protein) NP_195688.1 


The preparation time of this page was 0.2 [sec].