[][] ath   AT5G04310 Gene
functional annotation
Function   Pectin lyase-like superfamily protein
GO BP
GO CC
GO:0031225 [list] [network] anchored component of membrane  (303 genes)  TAS  
GO:0005576 [list] [network] extracellular region  (3363 genes)  ISM  
GO MF
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (96 genes)
Protein NP_001318478.1  NP_001331869.1  NP_196051.2 
BLAST NP_001318478.1  NP_001331869.1  NP_196051.2 
Orthologous [Ortholog page] PMR6 (ath)LOC4348800 (osa)LOC7468445 (ppo)LOC7479851 (ppo)LOC25485548 (mtr)LOC100246124 (vvi)LOC100281581 (zma)LOC100789303 (gma)LOC100808438 (gma)LOC101260911 (sly)LOC101264881 (sly)LOC101264933 (sly)LOC103829999 (bra)LOC103841403 (bra)LOC103847312 (bra)LOC103855563 (bra)
Subcellular
localization
wolf
plas 5,  chlo 1,  nucl 1,  mito 1,  vacu 1,  E.R. 1,  pero 1,  golg 1,  chlo_mito 1,  E.R._vacu 1  (predict for NP_001318478.1)
plas 4,  chlo 1,  nucl 1,  cyto 1,  mito 1,  vacu 1,  E.R. 1,  pero 1,  golg 1,  cyto_nucl 1,  chlo_mito 1,  E.R._vacu 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_001331869.1)
plas 5,  chlo 1,  nucl 1,  mito 1,  vacu 1,  E.R. 1,  pero 1,  golg 1,  chlo_mito 1,  E.R._vacu 1  (predict for NP_196051.2)
Subcellular
localization
TargetP
mito 2  (predict for NP_001318478.1)
mito 2  (predict for NP_001331869.1)
mito 2  (predict for NP_196051.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00270 Cysteine and methionine metabolism 2
ath00040 Pentose and glucuronate interconversions 2
Genes directly connected with AT5G04310 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
3.7 PME3 pectin methylesterase 3 [detail] 820651
3.7 ATL8 RING/U-box superfamily protein [detail] 843974
3.6 AT2G34140 Dof-type zinc finger DNA-binding family protein [detail] 817975
Coexpressed
gene list
[Coexpressed gene list for AT5G04310]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245708_at
245708_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245708_at
245708_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
245708_at
245708_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 830310    
Refseq ID (protein) NP_001318478.1 
NP_001331869.1 
NP_196051.2 


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