[][] ath   At5g04620 Gene
functional annotation
Function   biotin F Plant GARDENPlant GARDEN JBrowse
GO BP
GO:0009102 [list] [network] biotin biosynthetic process  (3 genes)  IDA IMP  
GO CC
GO:0005777 [list] [network] peroxisome  (311 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  ISM  
GO MF
GO:0008710 [list] [network] 8-amino-7-oxononanoate synthase activity  (1 genes)  IEA IGI  
GO:0030170 [list] [network] pyridoxal phosphate binding  (26 genes)  IEA  
GO:0003824 [list] [network] catalytic activity  (5771 genes)  IEA  
KEGG ath00780 [list] [network] Biotin metabolism (16 genes)
ath01240 [list] [network] Biosynthesis of cofactors (236 genes)
Protein NP_001332170.1  NP_196082.2  NP_974731.1 
BLAST NP_001332170.1  NP_196082.2  NP_974731.1 
Orthologous [Ortholog page] LOC4327870 (osa)LOC4349380 (osa)LOC11411786 (mtr)LOC18094027 (ppo)LOC100776585 (gma)LOC100820189 (gma)LOC101249827 (sly)LOC103847272 (bra)LOC123052472 (tae)LOC123058524 (tae)LOC123065619 (tae)LOC123128515 (tae)LOC123181687 (tae)LOC123439484 (hvu)LOC123440234 (hvu)
Subcellular
localization
wolf
plas 6,  vacu 2,  E.R. 1  (predict for NP_001332170.1)
plas 4,  E.R. 3,  cyto_plas 3,  chlo 1  (predict for NP_196082.2)
plas 6,  vacu 2,  E.R. 1  (predict for NP_974731.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001332170.1)
other 8  (predict for NP_196082.2)
other 7  (predict for NP_974731.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 6
ath00061 Fatty acid biosynthesis 5
ath01212 Fatty acid metabolism 5
ath00780 Biotin metabolism 4
ath00620 Pyruvate metabolism 4
Genes directly connected with BIOF on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.8 EMB3141 Pentatricopeptide repeat (PPR-like) superfamily protein [detail] 835107
7.5 BIO2 Radical SAM superfamily protein [detail] 818937
7.1 LPD1 lipoamide dehydrogenase 1 [detail] 820951
4.6 AT1G42430 inactive purple acid phosphatase-like protein [detail] 840847
Coexpressed
gene list
[Coexpressed gene list for BIOF]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250837_at
250837_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250837_at
250837_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
250837_at
250837_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 830339    
Refseq ID (protein) NP_001332170.1 
NP_196082.2 
NP_974731.1 


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