ATTED-II : GeneID search result

[←][→] ath AT5G07440 Gene

functional annotation

Function

glutamate dehydrogenase 2

GO BP

GO:0046686 [list] [network] response to cadmium ion	(346 genes)	IEP
GO:0006520 [list] [network] cellular amino acid metabolic process	(369 genes)	IEA
GO:0055114 [list] [network] oxidation-reduction process	(1468 genes)	IEA

GO CC

GO:0005774 [list] [network] vacuolar membrane	(624 genes)	IDA
GO:0005794 [list] [network] Golgi apparatus	(1430 genes)	RCA
GO:0005886 [list] [network] plasma membrane	(3771 genes)	HDA
GO:0005739 [list] [network] mitochondrion	(4405 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	ISM

GO MF

GO:0004352 [list] [network] glutamate dehydrogenase (NAD+) activity	(1 genes)	IDA
GO:0004353 [list] [network] glutamate dehydrogenase [NAD(P)+] activity	(4 genes)	IDA
GO:0050897 [list] [network] cobalt ion binding	(51 genes)	IDA
GO:0005507 [list] [network] copper ion binding	(185 genes)	IDA
GO:0008270 [list] [network] zinc ion binding	(554 genes)	IDA
GO:0005524 [list] [network] ATP binding	(2003 genes)	IDA

KEGG

ath00220 [list] [network] Arginine biosynthesis (36 genes)

ath00250 [list] [network] Alanine, aspartate and glutamate metabolism (51 genes)

ath00910 [list] [network] Nitrogen metabolism (43 genes)

ath01200 [list] [network] Carbon metabolism (273 genes)

Protein

NP_001119183.1 NP_001119184.1 NP_196361.1

BLAST

NP_001119183.1 NP_001119184.1 NP_196361.1

Orthologous

[Ortholog page] LOC542220 (zma) gdh1 (sly) GDH1 (gma) GDH2 (gma) GDH3 (ath) GDH1 (ath) LOC4330164 (osa) LOC4334405 (osa) LOC4336554 (osa) LOC7456680 (ppo) LOC7469881 (ppo) LOC7482352 (ppo) LOC11414500 (mtr) LOC11433210 (mtr) LOC25493591 (mtr) LOC25498983 (mtr) LOC100193614 (zma) GDHB (vvi) GDH (vvi) LOC100263048 (vvi) LOC100777869 (gma) LOC100789509 (gma) LOC100793231 (gma) LOC100801250 (gma) LOC100801991 (gma) LOC101246116 (sly) LOC101252088 (sly) LOC103828225 (bra) LOC103845860 (bra) LOC103847058 (bra) LOC103850656 (bra) LOC103855726 (bra)

Subcellular
localization
wolf

mito 5, chlo_mito 4, chlo 3	(predict for NP_001119183.1)
mito 5, chlo_mito 4, chlo 3	(predict for NP_001119184.1)
mito 5, chlo_mito 4, chlo 3	(predict for NP_196361.1)

Subcellular
localization
TargetP

mito 6	(predict for NP_001119183.1)
mito 6	(predict for NP_001119184.1)
mito 6	(predict for NP_196361.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00250	Alanine, aspartate and glutamate metabolism	3
ath00280	Valine, leucine and isoleucine degradation	3
ath00562	Inositol phosphate metabolism	3
ath01200	Carbon metabolism	3
ath00052	Galactose metabolism	2

Genes directly connected with GDH2 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
7.9	STY46	ACT-like protein tyrosine kinase family protein	[detail]	830003
7.0	MIOX2	myo-inositol oxygenase 2	[detail]	816499
6.8	POP2	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	[detail]	821784
6.4	GAT1_2.1	Class I glutamine amidotransferase-like superfamily protein	[detail]	838069
5.5	CDPK2	calcium-dependent protein kinase 2	[detail]	840471
5.4	AT5G38200	Class I glutamine amidotransferase-like superfamily protein	[detail]	833802
4.7	AT3G19390	Granulin repeat cysteine protease family protein	[detail]	821473
3.5	AT4G36820	calcium uniporter (DUF607)	[detail]	829835

Coexpressed
gene list

[Coexpressed gene list for GDH2]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

250580_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

250580_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

250580_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	830635
Refseq ID (protein)	NP_001119183.1
	NP_001119184.1
	NP_196361.1

The preparation time of this page was 0.2 [sec].