[][] ath   AT5G08180 Gene
functional annotation
Function   Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
GO BP
GO:0031120 [list] [network] snRNA pseudouridine synthesis  (2 genes)  IBA  
GO:0031118 [list] [network] rRNA pseudouridine synthesis  (5 genes)  IBA  
GO:0000469 [list] [network] cleavage involved in rRNA processing  (17 genes)  IBA  
GO:0000470 [list] [network] maturation of LSU-rRNA  (26 genes)  IBA  
GO CC
GO:0031429 [list] [network] box H/ACA snoRNP complex  (7 genes)  IBA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0034513 [list] [network] box H/ACA snoRNA binding  (3 genes)  IBA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
Protein NP_001190260.1  NP_196435.1 
BLAST NP_001190260.1  NP_196435.1 
Orthologous [Ortholog page] LOC4330603 (osa)LOC4340741 (osa)LOC7485927 (ppo)LOC11443631 (mtr)LOC100193012 (zma)LOC100266210 (vvi)LOC100305515 (gma)LOC100383935 (zma)LOC100499993 (gma)LOC100804186 (gma)LOC100810689 (gma)LOC101268074 (sly)LOC103847136 (bra)LOC103850685 (bra)LOC103855764 (bra)
Subcellular
localization
wolf
cyto 6,  chlo 2,  pero 1  (predict for NP_001190260.1)
cyto 6,  chlo 2,  pero 1  (predict for NP_196435.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001190260.1)
other 9  (predict for NP_196435.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
ath03008 Ribosome biogenesis in eukaryotes 3
Genes directly connected with AT5G08180 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
12.8 RPL23AB ribosomal protein L23AB [detail] 824694
11.8 HDT4 histone deacetylase-related / HD-like protein [detail] 817331
11.7 AT2G43110 U3 containing 90S pre-ribosomal complex subunit [detail] 818913
11.5 ROC2 rotamase cyclophilin 2 [detail] 824773
10.3 AT2G44860 Ribosomal protein L24e family protein [detail] 819095
10.1 AT3G59670 elongation factor [detail] 825136
9.7 AT1G08580 hypothetical protein [detail] 837380
9.3 AT5G20160 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [detail] 832138
6.1 AT2G41650 hypothetical protein [detail] 818763
Coexpressed
gene list
[Coexpressed gene list for AT5G08180]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
250546_at
250546_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
250546_at
250546_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
250546_at
250546_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 830714    
Refseq ID (protein) NP_001190260.1 
NP_196435.1 


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